Plant FIBer expression Database

Potri.006G130700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G086700
[exp]
363 / 3e-129 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Potri.005G120400
[exp]
54 / 1e-08 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Potri.007G021600
[exp]
53 / 3e-08 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026489
[exp]
336 / 3e-118 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Lus10019919
[exp]
258 / 4e-88 AT5G03080 238 / 2e-80 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Lus10028327
[exp]
56 / 4e-09 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10028328
[exp]
53 / 3e-08 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10041774
[exp]
50 / 3e-07 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10028326
[exp]
47 / 5e-06 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Lus10041773
[exp]
43 / 5e-05 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0525 pap2 PF01569 PAP2 PAP2 superfamily
Representative CDS sequence
>Potri.006G130700.1 pacid=42767422 polypeptide=Potri.006G130700.1.p locus=Potri.006G130700 ID=Potri.006G130700.1.v4.1 annot-version=v4.1
ATGCCCAATCCGCCACTTAAAGCTGTGACTCTCACCCACGTACGCTACCATAAAGGTGACCGATTAGGCCATTTCTTAGCCTGGGTTTCACTAGTTCCTG
TCTTCATAAGCCTAGGCGGTTTCTTCACTCACTTCGTATTCCGTCGTGAACTCCATTGCATGTTCTTCGCTTTAGGCCTTATTATTTCCCAATTCATCAA
CGAAATCATCAAATCGTCTGTCCAACAAGCCCGACCTGAAACCTGTGCACTTCTTGAGATGTGTGATTCTCATGGCTGGCCTTCTAGTCATTCTCAGTAC
ATGTTCTTTTTCGCTGTTTATTTTACTTTATTGACAGTTGAAGGAATTGGGTTGTCTCAGGTTAAGAATAAATGGGCTGTTAATTTTTGTCCATGGTCAT
TAGCTGTTTTGACCATGTTTTCGAGAGTTTATTTAGGGTATCATACGGTTGCCCAGGTTTTTGCTGGGGCTGCTTTAGGGATTTTTCTTGGGGCGTGCTG
GTTTTGGGTTGTGAATAATGTAATTTATGAATATTTTCCGGTGATTGAGGAGAGTAAGTTTGGAAGGATGTTTTATGTGAAGGATACTTCGCATATTAAG
AATGTTTTGAAGTTTGAGTATGATAATGCAAGAGCTGCTAGAAAGAATATGGCTGACAAGGCTAATTGA
AA sequence
>Potri.006G130700.1 pacid=42767422 polypeptide=Potri.006G130700.1.p locus=Potri.006G130700 ID=Potri.006G130700.1.v4.1 annot-version=v4.1
MPNPPLKAVTLTHVRYHKGDRLGHFLAWVSLVPVFISLGGFFTHFVFRRELHCMFFALGLIISQFINEIIKSSVQQARPETCALLEMCDSHGWPSSHSQY
MFFFAVYFTLLTVEGIGLSQVKNKWAVNFCPWSLAVLTMFSRVYLGYHTVAQVFAGAALGIFLGACWFWVVNNVIYEYFPVIEESKFGRMFYVKDTSHIK
NVLKFEYDNARAARKNMADKAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03080 Phosphatidic acid phosphatase ... Potri.006G130700
[exp]
0 1
AT5G11910 alpha/beta-Hydrolases superfam... Potri.006G227900
[exp]
5.74 0.8045
AT5G51040 unknown protein Potri.015G108300
[exp]
10.72 0.8111
AT3G06050 PRXIIF, ATPRXII... peroxiredoxin IIF (.1) Potri.019G024000
[exp]
13.03 0.8483 PtrcPrxIIF,Pt-PRX.1
AT1G65560 Zinc-binding dehydrogenase fam... Potri.010G177700
[exp]
21.44 0.7971
AT5G09570 Cox19-like CHCH family protein... Potri.009G078100
[exp]
54.96 0.7384
AT5G51880 2-oxoglutarate (2OG) and Fe(II... Potri.015G135300
[exp]
70.62 0.7786
AT2G17695 unknown protein Potri.005G105500
[exp]
74.21 0.7703
AT4G35360 Uncharacterised conserved prot... Potri.009G169000
[exp]
79.97 0.7619
AT4G09830 Uncharacterised conserved prot... Potri.001G003400
[exp]
103.99 0.7527
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Potri.007G022700
[exp]
121.36 0.7417

Potri.006G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.