Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60390 863 / 0 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 863 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 863 / 0 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 863 / 0 GTP binding Elongation factor Tu family protein (.1) AT1G18070 290 / 2e-92 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 284 / 5e-89 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G35550 174 / 1e-53 elongation factor Tu C-terminal domain-containing protein (.1) AT4G02930 165 / 7e-46 GTP binding Elongation factor Tu family protein (.1) AT4G20360 164 / 2e-45 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT2G31060 71 / 5e-13 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219500 [exp] 884 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 884 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 884 / 0 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 878 / 0 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 878 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 878 / 0 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 876 / 0 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.016G086500 [exp] 483 / 2e-172 AT5G60390 479 / 5e-171 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.019G062500 [exp] 291 / 2e-93 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019918 [exp] 883 / 0 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 880 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 880 / 0 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023174 [exp] 857 / 0 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 788 / 0 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10015070 [exp] 675 / 0 AT1G07930 684 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10020153 [exp] 308 / 6e-98 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 308 / 2e-93 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041996 [exp] 286 / 3e-91 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 285 / 3e-90 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [poplar] [flax] PF03143 [poplar] [flax] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.006G130900.3 pacid=42767521 polypeptide=Potri.006G130900.3.p locus=Potri.006G130900 ID=Potri.006G130900.3.v4.1 annot-version=v4.1 ATGGGCAAGGAGAAGGTTCACATTAACATTGTGGTTATTGGTCATGTTGACTCTGGCAAGTCAACCACTACTGGTCATTTGATCTACAAGCTTGGAGGTA TTGACAAGCGTGTGATTGAGAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCATTCAAGTATGCCTGGGTTTTGGACAAGCTTAAGGCTGAGCG TGAGCGTGGTATCACAATTGACATTGCTCTCTGGAAGTTTGAGACAACTAGGTACTACTGCACTGTCATTGATGCCCCTGGTCATCGTGACTTTATCAAG AATATGATCACTGGTACCTCACAGGCTGACTGTGCTGTCCTAATTATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCC GTGAACATGCCTTGCTTGCCTTCACCCTTGGTGTGAAGCAGATGATTTGCTGTTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGTCTCGGTT CGATGAAATCGTGAAGGAAGTTTCTTCCTACCTGAAGAAGGTTGGTTACAACCCTGACAAGATCCCATTTGTCCCTATATCTGGTTTTGAGGGTGATAAC ATGATCGAGAGGTCCACCAACCTTGACTGGTACAAGGGCCCCACCCTCCTTGATGCTCTTGACCAGATCAGTGAGCCCAAGAGACCCACAGACAAGCCTC TCCGTCTTCCACTTCAGGATGTCTACAAGATTGGTGGTATTGGAACTGTACCTGTGGGACGTGTTGAGACTGGTGTCCTGAAGCCTGGTATGGTCGTGAC CTTCGGCCCCACTGGACTGACCACTGAAGTTAAATCTGTTGAGATGCACCATGAAGCTCTTCAGGAGGCCCTTCCAGGTGACAATGTTGGTTTCAATGTT AAGAATGTTGCTGTCAAGGATCTCAAACGTGGTTTTGTTGCTTCCAACTCTAAGGATGATCCTGCCAAGGAGGCTGCCAACTTCACCTCTCAGGTCATCA TCATGAACCACCCTGGTCAAATTGGGAATGGATATGCCCCTGTCCTTGACTGTCACACCTGCCACATTGCTGTCAAGTTTGCTGAGATTTTGACCAAGAT TGACAGGCGATCTGGCAAAGAGCTCGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGGTTTGTGAAGATGATTCCCACCAAGCCTATGGTTGTT GAGACCTTTTCTGCCTATCCTCCTCTTGGTCGTTTTGCAGTGAGGGACATGCGTCAGACCGTGGCGGTTGGTGTCATTAAGAGTGTTGAGAAGAAGGATC CATCTGGTGCCAAGGTCACCAAGTCTGCAGTAAAGAAAAAGTGA
AA sequence Show only first row Show all	>Potri.006G130900.3 pacid=42767521 polypeptide=Potri.006G130900.3.p locus=Potri.006G130900 ID=Potri.006G130900.3.v4.1 annot-version=v4.1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIK NMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKSRFDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDN MIERSTNLDWYKGPTLLDALDQISEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNV KNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTCHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVV ETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60390			GTP binding Elongation factor ...		Potri.006G130900 [exp]	0	1
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.008G053800 [exp]	2.00	0.8384	Pt-UBC13.3
AT2G34520		RPS14	mitochondrial ribosomal protei...		Potri.001G424950 [exp]	2.44	0.8153
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	4.24	0.7848
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	6.63	0.7652
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Potri.019G013100 [exp]	7.41	0.7248	Pt-GIF1.1
AT2G18110			Translation elongation factor...		Potri.009G018600 [exp]	7.74	0.7645
AT1G48170			unknown protein		Potri.008G099700 [exp]	8.77	0.7385
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G196600 [exp]	10.48	0.7273	Pt-RPS18.2
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.010G217100 [exp]	11.22	0.7590	RPS23.2
AT1G79390			unknown protein		Potri.010G174700 [exp]	14.69	0.7222

Compare expression of checked genes

Potri.006G130900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.