Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37090 439 / 6e-155 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G27600 231 / 1e-72 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT5G67230 86 / 4e-18 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 79 / 7e-16 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086400 [exp] 604 / 0 AT2G37090 473 / 4e-168 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G240200 [exp] 248 / 1e-78 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.002G107300 [exp] 226 / 1e-70 AT1G27600 477 / 1e-168 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.007G047500 [exp] 69 / 1e-12 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G141500 [exp] 69 / 2e-12 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.018G039901 [exp] 39 / 0.0007 AT2G37090 41 / 3e-05 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019917 [exp] 417 / 1e-145 AT2G37090 417 / 3e-146 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026487 [exp] 402 / 1e-139 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10015069 [exp] 230 / 2e-73 AT2G37090 236 / 9e-76 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032817 [exp] 222 / 5e-69 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10007692 [exp] 221 / 2e-68 AT1G27600 498 / 2e-176 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10010268 [exp] 75 / 2e-14 AT5G67230 634 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041601 [exp] 75 / 2e-14 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10011500 [exp] 68 / 2e-12 AT5G67230 379 / 6e-130 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019325 [exp] 60 / 1e-09 AT5G67230 335 / 5e-127 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03360 [poplar] [flax] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Potri.006G131000.1 pacid=42767330 polypeptide=Potri.006G131000.1.p locus=Potri.006G131000 ID=Potri.006G131000.1.v4.1 annot-version=v4.1 ATGGGGTCTTTGGAAAGATCAAAGAAGAAAGTTCAATTATGGAAGAAAGCTATAGTTCATTTTGGTTTATGTTTTGTTATGGGCTTTTTTACAGGTTTCG CTCCAGGGGGCAAGGCTTCAATTTTTTCTAGTCATGTTGTTGCATCAAATAAATCGCAACCTGTTGAAATGTTGCACCAGCAGGTAGCAAGTACACCACA TGCTAGTAATGTTAACAGAAGTTTGATAGCTGAAAGTCCTGTGCCAACTCCATTAAGCTCCAAGGAATCTGAACCTGCAAAATTCTTGGAAAAAGAAGAA GAACCAAAACCCAAGTTACTACCAAGAAGACTGGCAATTATCGTTACGCCAATTAGCACTGAAGATCCGTACCAAGGGGTGTTTTTGAGGAGGTTAGCTA ATACAATCAGGCTGGTTCCGCCACCATTATTGTGGATTGTTGTGGAAGGGCAATCAGATTCAGATGAAGTATCGGAGATACTTAGAAAAACAGGCATCAT GTATAGGCATTTGGTCATCAAGGAGAATTTTACAGATCCTGAAGCAGAGCTGGATCATCAAAGGAATGTTGCTTTAAGGCACATTGAGCAACACAGGCTG AGTGGAATTGTTCATTTTGCCGGGCTTTCCAATGTTTATGATCTTGGCTTCTTTGACGAGCTTAGGCAAATTGAGGTGTTTGGGACATGGCCAGTGGCTC TACTTTCAGCAAACAAAAACAAAGTCACAATTGAAGGACCCGTATGTGATTCCTCGCAGGTTATTGGGTGGCATCTGAAGAAAATGAACAACGAAACGGA TAAAAGGCCTCCAATCCATATTTCAAGTTTTGGATTCAACAGTTCGATCCTTTGGGATCCTGAGAGATGGGGTCGCCCTTCATCAGTCCAGCAAACCTCA CAGAATTCAATCAAATTTGTCAAACAAGCAGCTCTTGAAGATGAAACAGAGTTGAAGGGAATCCCACCAGAGGACTGCTCAAAAATCATGCTTTGGCGTC TTAATCTTCCCGTTTCAAAATCACCAAGCTACCATCTTTCAACCACCGGATCCACGGATGCTAGCAGGAGAAAAATATGA
AA sequence Show only first row Show all	>Potri.006G131000.1 pacid=42767330 polypeptide=Potri.006G131000.1.p locus=Potri.006G131000 ID=Potri.006G131000.1.v4.1 annot-version=v4.1 MGSLERSKKKVQLWKKAIVHFGLCFVMGFFTGFAPGGKASIFSSHVVASNKSQPVEMLHQQVASTPHASNVNRSLIAESPVPTPLSSKESEPAKFLEKEE EPKPKLLPRRLAIIVTPISTEDPYQGVFLRRLANTIRLVPPPLLWIVVEGQSDSDEVSEILRKTGIMYRHLVIKENFTDPEAELDHQRNVALRHIEQHRL SGIVHFAGLSNVYDLGFFDELRQIEVFGTWPVALLSANKNKVTIEGPVCDSSQVIGWHLKKMNNETDKRPPIHISSFGFNSSILWDPERWGRPSSVQQTS QNSIKFVKQAALEDETELKGIPPEDCSKIMLWRLNLPVSKSPSYHLSTTGSTDASRRKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	0	1
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	1.41	0.9750
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	1.41	0.9741
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	2.00	0.9622	Pt-FLA14.7
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	2.44	0.9715
AT3G51325			RING/U-box superfamily protein...		Potri.005G109600 [exp]	3.00	0.9508
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	3.87	0.9602
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	4.47	0.9384
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.008G095000 [exp]	4.58	0.9381	Pt-GRF12.2
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	4.58	0.9569
AT3G44220			Late embryogenesis abundant (L...		Potri.009G019600 [exp]	4.69	0.9473

Compare expression of checked genes

Potri.006G131000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.