Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03040 368 / 1e-123 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 296 / 1e-95 IQD1 IQ-domain 1 (.1.2) AT3G52290 279 / 3e-89 IQD3 IQ-domain 3 (.1) AT2G26410 166 / 1e-45 IQD4 IQ-domain 4 (.1) AT2G43680 125 / 1e-30 IQD14 IQ-domain 14 (.1.2.3) AT3G22190 122 / 4e-30 IQD5 IQ-domain 5 (.1.2) AT3G59690 119 / 6e-29 IQD13 IQ-domain 13 (.1) AT2G26180 116 / 2e-28 IQD6 IQ-domain 6 (.1) AT2G33990 112 / 5e-28 IQD9 IQ-domain 9 (.1) AT4G00820 115 / 1e-27 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086300 [exp] 748 / 0 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 409 / 3e-139 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.013G127200 [exp] 143 / 4e-37 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.006G226600 [exp] 139 / 3e-36 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.019G095700 [exp] 140 / 4e-36 AT3G59690 433 / 2e-147 IQ-domain 13 (.1) Potri.001G215200 [exp] 133 / 3e-34 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 127 / 6e-32 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.011G153400 [exp] 126 / 3e-31 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.002G178500 [exp] 124 / 1e-30 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019916 [exp] 459 / 2e-159 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 447 / 7e-153 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 360 / 5e-121 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 355 / 7e-118 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 310 / 2e-103 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10015068 [exp] 182 / 8e-55 AT5G03040 202 / 4e-63 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 128 / 3e-32 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10027059 [exp] 129 / 4e-32 AT3G59690 496 / 1e-171 IQ-domain 13 (.1) Lus10025593 [exp] 127 / 1e-31 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10013522 [exp] 124 / 1e-30 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.006G131100.2 pacid=42769647 polypeptide=Potri.006G131100.2.p locus=Potri.006G131100 ID=Potri.006G131100.2.v4.1 annot-version=v4.1 ATGGGGAGGAAAGGAAAATGGTTTTCTAGTGTAAAGAAAGCTCTTAGCCCTGATTCCAAGGAGAAGAAAGACCAGAAATCAAATAAATCGAAGAAGAAAT GGTTTGGCAAGCAACAACTGGATTCGGATTCCACTTCTTTAGAAAATGTTACAATGCGATCTCCTCCTCCTCCTCAACCAGACGAGGTGAAATTAATTGA AACCACAAATGAAGAGAACCAGCATACTTACTCTGTTCCAGTTGTCACTGCTGCAGTAGCTGAGCATGCTCCGATTACTGTTCAAACCACCACTGAGGTT TTTCAACCAACCAAGGTTAATAAATATGCTGGCAAATCAAAGGAAGAAGTGGCGGCAATTAAGATTCAGACAGCATTCCGAGGATACATGGCAAGAAGAG CATTGCGGGCTCTGAGAGGGCTGTTCAGGCTCAAATCTCTGATGGAAGGGCCTACGATAAAAAGACAAGCAACCCATACTCTCCACTGCATGCAGACTCT AGCTCGGGTGCAGTCACAGATACACACAAGGAGGATTAGAATGTCAGAAGAGAACCAGGCCCTACAGAGACAACTCCTACATGAGCATGCAAAAGAGTTT GAAAGCTTGCAGATTGGAGAGGAATGGGATGACAGTCTACAGTCAAAGGAACAGATTGAAGCTAAACTGCTAAACAAGTTTGAGGCAGCTGTGAGAAGGG AAAGAGCACTGGCTTATTCTTTCTCTCATCAGCAAGCCTGGAAAATTTCTTCACGAGCTGTAAACCCAATGTTCATGAGTGGCAATCCATCCTGGGGTTG GAGCTGGTTGGAACGATGGATGGCAGCCCATCCATGGGAGAGCCGGAGCATGACGGAGAAAGAACTTAATAATGACCACTCATCTCTAAAGAGTGCGAGC CGCAGCATTACTGGAGGGGATATAAGCAAATCTTATGCTCGCTACCAGCTCAATTCTGATAAACTAACTCCAAGAGAAAGTGAAAGGCCAACCAAAACCG CGAACCTACAGTTCCAATCAACTCCTAACAAGCCAGCTGCTTCTACAGTTGCTAGAAAATTGAAGTCAGCCAGCCCAAGGAGTGGCATTGGGGGCCTAGA TGATGAATCTAAAAGTGTGGTCAGTGTTCAGTCAGATCATAGTAGAAGGCATAGCATTGCAGGTTCATTTGTACGAGATGATGAGAGCCTTGGAAGCTCT CCACCACTTCCAAGTTACATGGTACCTACAGAATCCGCGAGAGCAAAGTCCAGATTACAAAACCCATTGGGGGCAGAGATGAACGGAGCGCCTGAAAAGG AAAAGGGATCCTTGGGGTCTGCCAAGAAGCGGCTTTCCTACCCTCCCTCACCAGCCAAAGCAAGGAGGTATTCAGGTCCCCCGAAATTGGAAAGCAGCTT AAAAGCAGAAAACAGTGAGGCTGCTGGCGAGGGCATTTAA
AA sequence Show only first row Show all	>Potri.006G131100.2 pacid=42769647 polypeptide=Potri.006G131100.2.p locus=Potri.006G131100 ID=Potri.006G131100.2.v4.1 annot-version=v4.1 MGRKGKWFSSVKKALSPDSKEKKDQKSNKSKKKWFGKQQLDSDSTSLENVTMRSPPPPQPDEVKLIETTNEENQHTYSVPVVTAAVAEHAPITVQTTTEV FQPTKVNKYAGKSKEEVAAIKIQTAFRGYMARRALRALRGLFRLKSLMEGPTIKRQATHTLHCMQTLARVQSQIHTRRIRMSEENQALQRQLLHEHAKEF ESLQIGEEWDDSLQSKEQIEAKLLNKFEAAVRRERALAYSFSHQQAWKISSRAVNPMFMSGNPSWGWSWLERWMAAHPWESRSMTEKELNNDHSSLKSAS RSITGGDISKSYARYQLNSDKLTPRESERPTKTANLQFQSTPNKPAASTVARKLKSASPRSGIGGLDDESKSVVSVQSDHSRRHSIAGSFVRDDESLGSS PPLPSYMVPTESARAKSRLQNPLGAEMNGAPEKEKGSLGSAKKRLSYPPSPAKARRYSGPPKLESSLKAENSEAAGEGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.006G131100 [exp]	0	1
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G062100 [exp]	1.41	0.9008
AT3G13410			unknown protein		Potri.012G124888 [exp]	3.00	0.8998
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	5.65	0.8987	CYP51G5,CYP51.1
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.010G151400 [exp]	8.48	0.8926	LPD2
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.008G097600 [exp]	10.90	0.9030	Pt-RGP3.4
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	13.22	0.8951	Pt-SAH7.2
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	13.41	0.8895
AT5G50175			unknown protein		Potri.015G083900 [exp]	14.69	0.8948
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.011G091100 [exp]	14.96	0.8941
AT3G16850			Pectin lyase-like superfamily ...		Potri.010G005500 [exp]	17.94	0.8698

Compare expression of checked genes

Potri.006G131100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.