Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35795 195 / 2e-66 Chaperone DnaJ-domain superfamily protein (.1) AT5G03030 176 / 8e-59 Chaperone DnaJ-domain superfamily protein (.1) AT3G09700 168 / 2e-55 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G043500 [exp] 174 / 7e-58 AT2G35795 179 / 4e-60 Chaperone DnaJ-domain superfamily protein (.1) Potri.012G038800 [exp] 166 / 1e-54 AT2G35795 160 / 3e-52 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G151200 [exp] 42 / 7e-06 AT3G59280 187 / 7e-63 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) Potri.010G243100 [exp] 39 / 0.0002 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 39 / 0.0003 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.001G347600 [exp] 39 / 0.0004 AT5G23240 149 / 2e-41 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G015700 [exp] 38 / 0.0006 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 38 / 0.0006 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041420 [exp] 171 / 6e-56 AT2G35795 194 / 2e-65 Chaperone DnaJ-domain superfamily protein (.1) Lus10040376 [exp] 173 / 4e-54 AT5G03030 184 / 6e-58 Chaperone DnaJ-domain superfamily protein (.1) Lus10036507 [exp] 143 / 3e-45 AT2G35795 163 / 3e-53 Chaperone DnaJ-domain superfamily protein (.1) Lus10023494 [exp] 137 / 6e-44 AT5G03030 135 / 3e-43 Chaperone DnaJ-domain superfamily protein (.1) Lus10015065 [exp] 115 / 5e-35 AT2G35795 118 / 3e-36 Chaperone DnaJ-domain superfamily protein (.1) Lus10019915 [exp] 122 / 1e-33 AT5G28540 321 / 2e-101 heat shock protein 70 (Hsp 70) family protein (.1) Lus10026485 [exp] 114 / 6e-33 AT1G09080 124 / 2e-36 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10042891 [exp] 42 / 2e-05 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 42 / 2e-05 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 40 / 0.0001 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G131200.1 pacid=42769887 polypeptide=Potri.006G131200.1.p locus=Potri.006G131200 ID=Potri.006G131200.1.v4.1 annot-version=v4.1 ATGGCTACACCATTGATAATGGGAATGGCGGTAGCAGCTACGGCATATGCTGGCAGATATGGCATCCAGGCTTGGCAGGCATTCAAAGCAAGGCCTCCAA CTGCTAGAATGCGTAAATTTTACGAAGGTGGCTTTCAATCTGTCATGACGAGGAGAGAAGCAGCTCTAATACTTGGAGTAAGGGAAAGTACTGCTGCAGA CAAGGTCAAGGAAGCACATAGGAGGGTGATGGTCGCAAACCATCCAGATGCAGGCGGAAGCCATTACCTTGCTTCTAAAATAAATGAAGCAAAGGATATC TTACTTGGAAAAACAAAGGGTGGTGGATCTGCATTTTAG
AA sequence Show only first row Show all	>Potri.006G131200.1 pacid=42769887 polypeptide=Potri.006G131200.1.p locus=Potri.006G131200 ID=Potri.006G131200.1.v4.1 annot-version=v4.1 MATPLIMGMAVAATAYAGRYGIQAWQAFKARPPTARMRKFYEGGFQSVMTRREAALILGVRESTAADKVKEAHRRVMVANHPDAGGSHYLASKINEAKDI LLGKTKGGGSAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35795			Chaperone DnaJ-domain superfam...		Potri.006G131200 [exp]	0	1
AT5G56940			Ribosomal protein S16 family p...		Potri.004G217400 [exp]	1.41	0.8226	Pt-RPS16.2
					Potri.001G340100 [exp]	2.00	0.8573
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Potri.012G045200 [exp]	5.00	0.7827
AT1G22970			unknown protein		Potri.008G126400 [exp]	5.00	0.7390
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.012G108600 [exp]	8.48	0.7767
AT1G73940			unknown protein		Potri.001G453400 [exp]	8.94	0.7711
AT2G46390		SDH8	succinate dehydrogenase 8, unk...		Potri.014G095901 [exp]	9.16	0.7576
AT5G39600			unknown protein		Potri.004G228566 [exp]	9.64	0.8141
AT5G38890			Nucleic acid-binding, OB-fold-...		Potri.013G050400 [exp]	10.81	0.7578
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Potri.006G149700 [exp]	10.90	0.7496

Compare expression of checked genes

Potri.006G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.