Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02970 659 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G09690 650 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G22460 147 / 9e-40 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G44510 144 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G74280 140 / 4e-37 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 139 / 1e-36 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 136 / 7e-36 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G36290 137 / 9e-36 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 136 / 1e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 128 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086200 [exp] 873 / 0 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 154 / 4e-42 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021400 [exp] 145 / 8e-39 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 139 / 2e-36 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 137 / 4e-36 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 137 / 4e-36 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G203700 [exp] 133 / 1e-34 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237800 [exp] 129 / 4e-33 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 127 / 2e-32 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019914 [exp] 711 / 0 AT5G02970 625 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10026484 [exp] 703 / 0 AT5G02970 625 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 153 / 9e-42 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 152 / 4e-41 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 150 / 7e-40 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 146 / 6e-39 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 144 / 2e-38 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 139 / 1e-36 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 139 / 3e-36 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 136 / 1e-35 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.006G131300.1 pacid=42769103 polypeptide=Potri.006G131300.1.p locus=Potri.006G131300 ID=Potri.006G131300.1.v4.1 annot-version=v4.1 ATGGCGGAGATGAAAGGAGGTGGAGGGGTGAACACGTGGGCAGATGAGCTAGCGAGTTTAATGGAGGACAGTGGAATCCGATATACCGGAGAGCCAATTG ATATGACGGCACCGCCACCGCCACCGCCGATATTCGCTGCAACAGGAATAATGGGATCGGAGACGGAAATGGAAAGGGAAAGGGAGAGTTTGAAGGAGCA AGTGACGGGGTTTTTGAAGTCGTGGGGAGAGATGGTGGTGGATTTAGGGAAAGGATGTAAAGATATAGTGACGCAAAGTAATTTGGTGACCGAAGATTCG TTTATTGTGCGAAAATTTGGAAAGCCAATGGCTAAAGCGTCGGCCAGATTAAAGTTTTTGAACGAGTTTTTGCCTGAGGATCGGGACCCTGCTCTAGCTT GGCCTGTCATTCTCTTCGTATTTGTTCTCGCTCTTGCAGCACTAAGTATAAATAGCACAGATGATAGCTTGGTTCCGTCGGTAAAGAAAATGCGTGTACA TCCGCCTAGTGCTAATCGCATACCGCTTCCTGATGGTCGACACATGGCTTATCTCGAGCAAGGTGTTCCGGCCGACAGAGCAAGATTTTCTGTGATTGTT CCGCATTCTTTTCTTTCCTCTCGACTCGCAGGTATACCTGGAGTCAAAACATCACTGCTTCAAGAGTTTGGTGTTCGCTTGATCACGTATGACCTTCCTG GTTTTGGAGAGAGCGATCCTCATGCCATCAGAAATCTTAACTCCTCGGCAATGGATATGCTCTACCTAGCTGACGCTGTTGGTGTTAATGGAAAGTTTTG GGTGCTGAGTTACTCAAGCGGAAGCATGCACTCTTGGGCTGCACTTAGATACATTCCAGACAGAATTGCTGGCGCTGGCATGTTTGCTCCATTGATTAAT CCATATGAGCCAAGCATGACAAAGGAAGAGATGAGAAGAACATGGGATCAGTGGTCCTCAAGAAGGAAGCTATTGTATTTCTTAGCTCGGAAATTTCCGA AGTTCCTTGCTTATTTTTATCACCGAAGCTTCCTGTCTGGAAATCATGGTCAAATTGATAAGTGGATGTCTCAATCACTTGGAAAGAAGGATGAAATTCT GATCAAGGAGCCAATGTTTGAGGAGTTTTGGCATAGGGATGTCGAGGAGTCGATACGCCAGGGGAGTACAAAATCGTTCATTGAGGAAGCCGTGCTACAG GTGTCAAACTGGGGTTTCAGCATAGCAGATCTTCAGGTGCAGAGGAAGTGCCAGAGGAATGGCTTTCTTCTTTGGCTCTGGTCAATGTACAGTCAGGCAG AATGTGAATTGGTGGGATTTCTTGGTCCAATACACATTTGGCAGGGTATGGATGATCAAGTAGTGCCGCCATCAATGATTGATTACATAAGCCGGGTTCT ACCAGGGGCCAACTTGCATGAGCTCCCAAATGAAGGCCACTTTTCGTACTACTTTTTCTGTGACGAATGCCACAGACAGATATTCTCTACTCTTTTTGGA GATGCTCTAGGTCCTCTTAACAAGGTGGAAATCGATGGAACTTCATTTGAAGCAGAGGTGGGAGAAGTATCATCCACTACAAATTCTGTCGGGAAATGA
AA sequence Show only first row Show all	>Potri.006G131300.1 pacid=42769103 polypeptide=Potri.006G131300.1.p locus=Potri.006G131300 ID=Potri.006G131300.1.v4.1 annot-version=v4.1 MAEMKGGGGVNTWADELASLMEDSGIRYTGEPIDMTAPPPPPPIFAATGIMGSETEMERERESLKEQVTGFLKSWGEMVVDLGKGCKDIVTQSNLVTEDS FIVRKFGKPMAKASARLKFLNEFLPEDRDPALAWPVILFVFVLALAALSINSTDDSLVPSVKKMRVHPPSANRIPLPDGRHMAYLEQGVPADRARFSVIV PHSFLSSRLAGIPGVKTSLLQEFGVRLITYDLPGFGESDPHAIRNLNSSAMDMLYLADAVGVNGKFWVLSYSSGSMHSWAALRYIPDRIAGAGMFAPLIN PYEPSMTKEEMRRTWDQWSSRRKLLYFLARKFPKFLAYFYHRSFLSGNHGQIDKWMSQSLGKKDEILIKEPMFEEFWHRDVEESIRQGSTKSFIEEAVLQ VSNWGFSIADLQVQRKCQRNGFLLWLWSMYSQAECELVGFLGPIHIWQGMDDQVVPPSMIDYISRVLPGANLHELPNEGHFSYYFFCDECHRQIFSTLFG DALGPLNKVEIDGTSFEAEVGEVSSTTNSVGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02970			alpha/beta-Hydrolases superfam...		Potri.006G131300 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	7.21	0.8976
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Potri.005G218900 [exp]	8.94	0.8275
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	12.56	0.8630
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.015G033600 [exp]	13.85	0.8468	MYB.38,MYB090
AT5G51670			Protein of unknown function (D...		Potri.012G129900 [exp]	14.49	0.8154
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.003G173300 [exp]	14.96	0.8547
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.012G016200 [exp]	16.79	0.8557
AT3G03610			ELMO/CED-12 family protein (.1...		Potri.013G069000 [exp]	20.12	0.7564
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	21.07	0.8415
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	26.19	0.8481

Compare expression of checked genes

Potri.006G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.