Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37080 473 / 1e-160 RIP3 ROP interactive partner 3 (.1) AT5G60210 402 / 3e-133 RIP5 ROP interactive partner 5 (.1.2) AT3G53350 172 / 8e-48 RIP4 ROP interactive partner 4 (.1.2.3) AT1G78430 93 / 2e-20 RIP2 ROP interactive partner 2 (.1) AT1G17140 77 / 5e-15 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) AT1G65010 70 / 4e-12 Plant protein of unknown function (DUF827) (.1) AT4G27595 70 / 4e-12 Plant protein of unknown function (DUF827) (.1) AT5G16730 46 / 7e-05 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085900 [exp] 1027 / 0 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.013G079000 [exp] 101 / 3e-22 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.019G047600 [exp] 97 / 7e-21 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.001G377900 [exp] 91 / 3e-19 AT1G78430 238 / 5e-76 ROP interactive partner 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026482 [exp] 606 / 0 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1) Lus10023173 [exp] 397 / 2e-132 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10019912 [exp] 367 / 4e-122 AT2G37080 264 / 7e-83 ROP interactive partner 3 (.1) Lus10015064 [exp] 172 / 1e-47 AT2G37080 155 / 4e-42 ROP interactive partner 3 (.1) Lus10011643 [exp] 136 / 3e-36 AT5G60210 152 / 6e-43 ROP interactive partner 5 (.1.2) Lus10020373 [exp] 57 / 3e-08 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10009550 [exp] 49 / 1e-05 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10013708 [exp] 46 / 7e-05 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) Lus10005576 [exp] 44 / 0.0002 AT1G17140 238 / 4e-76 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G131400.12 pacid=42769679 polypeptide=Potri.006G131400.12.p locus=Potri.006G131400 ID=Potri.006G131400.12.v4.1 annot-version=v4.1 ATGATGCAGACACCAAAAGCGAAAACCATCTCTTTGGAAGTGCCTCGGAAGAAATCTCCTGCAACACCTCGAACTCGGCAACTCAAGACACCTGGAGCAG AAACTGACTGTGTCTCTCCAAATCCAGCAAGTAGGACCCCAAAAGACAGAAGCCCTAAAGTCACTGAAAGGAAATCACCACGAAGTCCAGCAACTGAGAA GAAGCGCCCAAGCAAAATATCAGAATTGGAATCACAGCTTGCACAACTCCAGGAGGATCTGAAGAAGGCAAAAGAGCAACTGAACACTTCAGAGTCATGG AAGAGGCGTTCCCAGCAGGAAGCTGAAGATACCAAGAAGCAGCTTTTAACCATGTCAGTGAGACTCGAGGAATCACAACATCAATTGATGGAGCTTTCTA GTTCTGAAGATGTCCGTGTTCAAGAGCTCCGTAAAATCTCCCATGATCGTGATAAAGCTTGGGAGTCTGAACTGGAGGCTGTACAGAAACAGCACTCTAT TGATTATTCAGCCTTGGCTTCTGCCATGAATGAAACCCAGAGGCTCAAAACTCAGCTGGAAATGGTAGTGGAATCTGAAGCTTCCCAAACAAAACATGTG GAGTCAGTGCATGCTGAATTAAAGGGGTTGAGGCTGGAACTAACTGAAACTCTCTCCCTTGTTGAAAAAATGAAAATTGAGCTCAGTGATACCAGGGAAT CTGAAGCTCAAGCCCTAGAACTTGCTAGTAAAACTCAAAAGCAATTGGAAGAAGCAAATGCAACTGCAGATATGCTGCAGGCTGATGGCGTCAAAGCCAT GGAGGCTTACAGATCCTTATCATTGGAGCTGGAACAATCAAGAGCTCAAGAACAATCTTTAGAGGAACTTGTGAGTAAATTGCAAGCAGATCTGGCAAAT GTCAGTGAGAAAACAGTCGAGAATCCTACAGGGGATGTTCAAGTTTCACATGAAAGTGTAGAAAATGAGGAAACAAAACAGCTCGAAGCAGAGATGAACC TTTTGAAAATTGAAGTAGGTCAGTTGAAATCCTTACTAGAAGCAACCGAGACACGGTGCCAGGAAGAATATATTCAAAGCACATTGCAGATTAGAAGTGC TTATGAGCAAGTTGAATGTACAAAGTTGGAATCAGGCCAAAGAGAGGCTAAATTGGAAACAGAATTGAAGAAAGCCAAAAATAATATTGAAGAGTTGAGG GCTAACCTGATGGATAAGGAAACTGAATTGCAGGGCATTTCTGAGGAGAATGAGGGACTGATGTTGAAGATTAAGAAAAATCAGCCAAGTGAGAGAGAAG CTGAACTTGCAATGGGGATGAAGAATTTAGAGCATGATCTGGCAGAGTTGAAGGCAAGTTTGTTGGATAAGGAAGCGCAGTTGCAGAGAGTAGCTGAGGA AAATGAAACACTCAGGACAGAAATCAAGAAAGGGGAAATAGAGCAAAGTAAAGTTAATGATGAAGCTGTTGCAATGGCAGAAACTGCAAGGGCTTCAGAA CATGAAGCTCTAATGAAACTTGGTTATCTGACAGAGGAAGCAGATAAAAGTAGCAGAAGAGCAGCACGGATGACTGAGCAACTGGATGCAGCCCAGACAG CGAACACAGAAATGGAGGCTGAATTGAGGAGGTTAAAGGTGCAGGCAGACCAGTGGAGGAAGGCCGCTGAGGCAGCTGCTGCTATGCTTTCAACTGGGAA CAATGGTAAATTTGTAGAGAGAACAGGTTCACTTGACAGCAACTATAATCCTATTGCTGGAAATATGGGTTCACCTTGCTCTGAAGATATGGATGATTCG CCAAGGAAGAAAAACAGGAACATGCTGAAGAAAATTGGGGTCTTGTGGAAGAAGGGTCAGAAGTAG
AA sequence Show only first row Show all	>Potri.006G131400.12 pacid=42769679 polypeptide=Potri.006G131400.12.p locus=Potri.006G131400 ID=Potri.006G131400.12.v4.1 annot-version=v4.1 MMQTPKAKTISLEVPRKKSPATPRTRQLKTPGAETDCVSPNPASRTPKDRSPKVTERKSPRSPATEKKRPSKISELESQLAQLQEDLKKAKEQLNTSESW KRRSQQEAEDTKKQLLTMSVRLEESQHQLMELSSSEDVRVQELRKISHDRDKAWESELEAVQKQHSIDYSALASAMNETQRLKTQLEMVVESEASQTKHV ESVHAELKGLRLELTETLSLVEKMKIELSDTRESEAQALELASKTQKQLEEANATADMLQADGVKAMEAYRSLSLELEQSRAQEQSLEELVSKLQADLAN VSEKTVENPTGDVQVSHESVENEETKQLEAEMNLLKIEVGQLKSLLEATETRCQEEYIQSTLQIRSAYEQVECTKLESGQREAKLETELKKAKNNIEELR ANLMDKETELQGISEENEGLMLKIKKNQPSEREAELAMGMKNLEHDLAELKASLLDKEAQLQRVAEENETLRTEIKKGEIEQSKVNDEAVAMAETARASE HEALMKLGYLTEEADKSSRRAARMTEQLDAAQTANTEMEAELRRLKVQADQWRKAAEAAAAMLSTGNNGKFVERTGSLDSNYNPIAGNMGSPCSEDMDDS PRKKNRNMLKKIGVLWKKGQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	0	1
AT2G29890		ATVLN1, VLN1	villin 1, villin-like 1 (.1.2....		Potri.009G045000 [exp]	2.00	0.8527	VLN1.1
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.001G357100 [exp]	4.47	0.7976
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	5.47	0.8095
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	8.77	0.7967
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	9.48	0.7474
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	10.48	0.8166
AT2G40070			unknown protein		Potri.008G066900 [exp]	11.04	0.8249
AT1G14185			Glucose-methanol-choline (GMC)...		Potri.010G168100 [exp]	11.74	0.8211
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	14.59	0.7323
AT5G27950			P-loop containing nucleoside t...		Potri.013G033900 [exp]	15.19	0.7535

Compare expression of checked genes

Potri.006G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.