Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53320 147 / 9e-37 unknown protein AT2G37070 115 / 2e-26 unknown protein AT5G60150 57 / 8e-08 unknown protein AT2G38890 45 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085600 [exp] 1248 / 0 AT3G53320 174 / 4e-46 unknown protein Potri.010G217000 [exp] 96 / 5e-20 AT2G38890 92 / 2e-20 unknown protein Potri.008G044500 [exp] 89 / 9e-18 AT2G38890 107 / 1e-25 unknown protein Potri.005G131500 [exp] 57 / 8e-08 AT5G60150 106 / 9e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023170 [exp] 242 / 6e-68 AT3G53320 133 / 1e-32 unknown protein Lus10026478 [exp] 166 / 2e-42 AT3G53320 56 / 8e-08 unknown protein Lus10019909 [exp] 130 / 7e-31 AT3G53320 93 / 1e-19 unknown protein Lus10023488 [exp] 58 / 3e-08 AT2G38890 100 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G131650.1 pacid=42766983 polypeptide=Potri.006G131650.1.p locus=Potri.006G131650 ID=Potri.006G131650.1.v4.1 annot-version=v4.1 ATGAATGAATCAGAGCAAAATTTCAGCTTCGAAGAAAAAACGCTAAGCCTCATTGATGTCTCCTTTGAAGACGATTGCCTTTATAACTCACCTTCCCACG ACTTCCATGTCCGATTCTCAGATACTAAGATAGGGGCCGAAAATAACTTGGGTTTTGCGGAAGCCAACAATATGCAATCCGAGCTGGCCTCCTTTGACGG GGGAGAACTAGGACCTGATCCTATTAAATCAATGGAACCAGAAAGGGTGAAAAAGAATACAAAGTATAACTTGCGCAAAAGCTTAGCTTGGAACAGTGCT TTCTTCACAAGTGCAGGTGTTCTGGAACCGGAGGAGTTGTCTAGCATGATTGGATGCGAGAAACATATGTTACCCGGGATTGAAGAGGATATCCATACAT CTAGTGATTCTATATCTACATTAGCGAGTGATAATTTGACCTCGGTGAATCTTGAGGAGGCTGACTTGTTTGGAGATATAAGAGCTTCAATCCAGCGATC CACTAAAGGGCCTGGTATGGAAAATTCAAATAGCAAAGTGGGTTCTCCAAAAACAGAAAGCAAAACCATCCGATCTTCGGAGAAAGTGGATGTTGCTTCT CGAAATAGGGTACCAGCTTCGGAGAAAGTGGATATCGCTTCTCGAAATAAGCTAAAGGCGAAAGCTGCTCCCAACAAGCCAAATGCAATCATGCAAGGAA CAGAGAAGACCGCAAAGCAGTCTGTTCCTATAAATGGAGAGTCAAAATCTCTTTATAGGCCGCCCAAGATAGTTGGCAGAGTTGGTCCCATTTTAGCACC AGCCACTAAGAGAGCTTCCTTGGGTGCCAACCGTGTCAAAGTGGAAAGGGCTAAGGATAATCCAGAAAATGCAAAAAAAATAGCTGGTAGAGGGGCAAAA GTACCTGCTTTGAGTGGTCCCAGAAATGCTGTGCCTAGGCCGACATTGCCTGTTAAATCTTCATTACGATCTTCATCAGCAATGAAGACTGCGCTAACAG CTTCTTCCTCTATCGATAGTTCTGGAAGCTTGTCATCAGACTGTAGCAGTAAATATTCATTAAATTCTGTGAGAAGAGAAAGTGACTCCAGAACTGGCAA TCATTCTTCCTCTGGTTCAAATGTCAAAACCACATTGAAATTCCCATCAAGAAATAAAAACCAGTCAGCAAGTTCTCATCTCTCACCTTATTTGAAATCT GTGGCCAAGCTCTCTTCCAGCATATCACCTGCTAGCTCTATCAGTGAATGGTCTTCGGCATCATTATCACCGATTTCTACCCTTAATAAAATGTCTAACA GTTCAAGATCTAGCTTTGACATTAGCTCTTGCAAAGATGCTTCTGGGGACAGTGATGCCTCCCAAGTTTTGGATTCTCAAAACCATTTAAATGACGAAAA CTCTGTTGGGCCTGGTACGCAAGTGGGATTGCTGGGTGAGAGTGTAAAGAAAGTTCCTACAGGAAGTAGTTCAGTTCTCCATCCAGATTCGGTTAAACCC TCAGGCCTTCGTTTGCCATCACCCAAAATTGGTTTCTTTGACGGGGGAATTGTTATACCCACATGTGATTTGTCAATTATGCAGGCGAGACCAACTGCAC GAACTCCAAATAGAAGCAAGCAATCTCATACAGCTCTGCCCAGTGGCTTGCCTGGATTTAGGGCAGGAAGTGTTAGTCCAAGTGGAGGGTCAAAAAATGC AAAGCTTGGAAAGCTTCAGCCTGCTAGAACAGCGCTTCGGGGTACCAAAATTAGTGATCAGGCAGCTGCCTTGGGCATGAAATCTCCCTCACCTCTGCAG GAATCCTCAAATGCAGCACCAAGGGCCTCCAGTGCTTTGAAAAACGAGAAACACAGTGCTAGCAAATCTCTAAAAGCTCAGAACAGAAAGTCATTTCTAG GTGAAAGAAAAAGTAATTTGAAGGCAGAGAAAATTGGATCAGAAGAATGTGGCACGTCTCTGAAGGATACAGATAGTGGTTTTACTGAAGGGAATGGGAA TGCCTGTTTTTTGAGTGATGCTCCTGGAAAAGATACTGAGATTACTCTCGGCAATGGATTGCATGATAAGACTACCGGCTTGAGTTCTATTCCCAAGGCT GAAAGTATGACCTCATTAGAGAAAGTAGGTGAAGATGTGGTATGTAGCCAGAATTATATCAAGAATAGTTTGCCTTCTCTTCACGGCACTAGTGAGAAGA AAAAAGCTTCTACTGAAGATCAAGTTGATGGTTTGACCAAACAAATTGGAGCTGTAGATTTTTATAATGAGTTGCACAAAGAAGCCATAGGTGATTCTCT TTCCCTTTCTCAAGATGATGTCGGTAGAGTTGCTTCTGGTATTCAGGAGGAATTCAAACAGTTGTCAAAGCCTACTTGCTCCCCAAATCCTGCTATGGCA TCAACAATCGTGGAAGCAGAGAAGGCAGAGGCAGGAATTGAGAAAGCTTCTGTTGAAGACCAAGTTGATGGTTTGACCAAACAAATTGGAGCTGTAGATT TTCATCTTGAGATGCACAAAGAAACTGTTGGTGATTCTCTTTGTCTTTCTCAAGATGATGTCAGCAGAGTTGATTCTGGTACTCAGGAGGAATTCAAAGA ATTGCCAAAGCCTACTTGCTCTCCAGTTCCTGCAATTGCATCATCAATGGTGGAAGCGGAGAAAGAAGAGGCAGGAATTCATAAAGCTACCGCTGAAGAC CAAGTTGATGGTTCGACCAAACTTGGTGATTTTCTTTCACTTTCTCAAGATGTCAGCAGAGTTGATTCTCATGTTCGGGAGCAATTCAAAGAGTTGTCAA AGCCTACTTGCTCTCCCACTCCTGTTATAGCATCAACAATGGTGGAAGCAGAGAAGGCAGAAGCAGGAATTGAAAAGGCTTCTGTTGAAGACCCAATTGA TGGTTTGATCAAACAAATTGGAGCCTTAGATATCCATCCCAAGGTGCACAAAGAAGTTGTGGGTGATTCTCTTTCCCTTTCTAAAGATTATGTCAGCAGA GTTAATTCTTGTATTCAGGAGGAATTCAAAGAGTTGTTGAAGCCCGCATGCTCTCCCACTCCAGCTATGGCATCAACAACAGTGGGAGTACAGAGGGCAG AGGCAGCCACCTTGCTAAATCCAGCAACCACACATGGAAAATCTGAAGATGGTGAAACATCCTAG
AA sequence Show only first row Show all	>Potri.006G131650.1 pacid=42766983 polypeptide=Potri.006G131650.1.p locus=Potri.006G131650 ID=Potri.006G131650.1.v4.1 annot-version=v4.1 MNESEQNFSFEEKTLSLIDVSFEDDCLYNSPSHDFHVRFSDTKIGAENNLGFAEANNMQSELASFDGGELGPDPIKSMEPERVKKNTKYNLRKSLAWNSA FFTSAGVLEPEELSSMIGCEKHMLPGIEEDIHTSSDSISTLASDNLTSVNLEEADLFGDIRASIQRSTKGPGMENSNSKVGSPKTESKTIRSSEKVDVAS RNRVPASEKVDIASRNKLKAKAAPNKPNAIMQGTEKTAKQSVPINGESKSLYRPPKIVGRVGPILAPATKRASLGANRVKVERAKDNPENAKKIAGRGAK VPALSGPRNAVPRPTLPVKSSLRSSSAMKTALTASSSIDSSGSLSSDCSSKYSLNSVRRESDSRTGNHSSSGSNVKTTLKFPSRNKNQSASSHLSPYLKS VAKLSSSISPASSISEWSSASLSPISTLNKMSNSSRSSFDISSCKDASGDSDASQVLDSQNHLNDENSVGPGTQVGLLGESVKKVPTGSSSVLHPDSVKP SGLRLPSPKIGFFDGGIVIPTCDLSIMQARPTARTPNRSKQSHTALPSGLPGFRAGSVSPSGGSKNAKLGKLQPARTALRGTKISDQAAALGMKSPSPLQ ESSNAAPRASSALKNEKHSASKSLKAQNRKSFLGERKSNLKAEKIGSEECGTSLKDTDSGFTEGNGNACFLSDAPGKDTEITLGNGLHDKTTGLSSIPKA ESMTSLEKVGEDVVCSQNYIKNSLPSLHGTSEKKKASTEDQVDGLTKQIGAVDFYNELHKEAIGDSLSLSQDDVGRVASGIQEEFKQLSKPTCSPNPAMA STIVEAEKAEAGIEKASVEDQVDGLTKQIGAVDFHLEMHKETVGDSLCLSQDDVSRVDSGTQEEFKELPKPTCSPVPAIASSMVEAEKEEAGIHKATAED QVDGSTKLGDFLSLSQDVSRVDSHVREQFKELSKPTCSPTPVIASTMVEAEKAEAGIEKASVEDPIDGLIKQIGALDIHPKVHKEVVGDSLSLSKDYVSR VNSCIQEEFKELLKPACSPTPAMASTTVGVQRAEAATLLNPATTHGKSEDGETS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53320			unknown protein		Potri.006G131650 [exp]	0	1
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.014G084200 [exp]	3.00	0.9245
AT4G22860			Cell cycle regulated microtubu...		Potri.003G117800 [exp]	4.00	0.9246
AT2G41620			Nucleoporin interacting compon...		Potri.015G026200 [exp]	4.12	0.9074
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	9.79	0.8914
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	10.19	0.9136
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	10.24	0.9026
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.005G209600 [exp]	10.90	0.9184	Pt-RANGAP1.1
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	10.95	0.9052	Pt-CALS1.3
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Potri.001G013500 [exp]	11.53	0.8559	Pt-MOD1.1
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	11.61	0.8930

Compare expression of checked genes

Potri.006G131650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.