Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02880 1614 / 0 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 566 / 5e-172 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT3G17205 125 / 8e-29 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT1G55860 125 / 3e-28 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 123 / 1e-27 UPL2 ubiquitin-protein ligase 2 (.1) AT3G53090 98 / 4e-20 UPL7 ubiquitin-protein ligase 7 (.1.2) AT3G06720 61 / 5e-09 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 56 / 2e-07 IMPA-2 importin alpha isoform 2 (.1.2) AT5G49310 52 / 3e-06 IMPA-5 importin alpha isoform 5 (.1) AT4G02150 49 / 2e-05 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085200 [exp] 2687 / 0 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1) Potri.004G174700 [exp] 580 / 6e-177 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.009G134300 [exp] 568 / 1e-172 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Potri.010G150000 [exp] 118 / 2e-26 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.011G094100 [exp] 116 / 1e-25 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 115 / 2e-25 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.008G101300 [exp] 110 / 7e-24 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.002G110500 [exp] 108 / 3e-23 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 97 / 8e-20 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019908 [exp] 1953 / 0 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027841 [exp] 577 / 9e-176 AT4G38600 2482 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10005068 [exp] 556 / 1e-169 AT4G38600 2305 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10002605 [exp] 111 / 5e-24 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 111 / 5e-24 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032830 [exp] 109 / 2e-23 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 91 / 6e-18 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10037820 [exp] 76 / 2e-13 AT3G17205 1099 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 71 / 7e-12 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10017098 [exp] 68 / 5e-11 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.006G132000.13 pacid=42770519 polypeptide=Potri.006G132000.13.p locus=Potri.006G132000 ID=Potri.006G132000.13.v4.1 annot-version=v4.1 ATGGGAAATCGTGGACAAAAACGAGCTGAGATGGTTAATGAATTGCCCTCTGATAAGAGAGCTTGTAGTTCATTGGAGTTTAGACCAAGTTCATCGAACT CATCAATTCAAACTCAAATAAATTCTGAGAATCATAATGCTGAAACCCATGATGCTGACATGGATACTTCATCATCTGGGTCGGCATCAAGCCATTCAGA CGAAGAAGAACCTGAGAGGGATTCAGCATATGGCTCTTGTGATTCTGAGGGTCCAAGACATAGCAGTTTGCGTGAGTATCAGAGGCAGAGATCCTCTGGT GATCATAGCAGATTGAGGGATTGTCTATCTAATTTAACTGAAGGAACTGAGCCTTCTGGGCAGTTAGCTGCTCTTACAGAGTTATGTGAAGTGCTTTCAT TTTGTACAGAGGATTCACTTTCAAGTACGATGGCAGACTCTTTGTCACCGGTGCTTGTTATGCTTTCAAGGCTTGAGAGTAACCCAGATATAATGCTATT GGCTATAAGGGCTTTAACTTATCTGTGTGATGTGTTCCCCCGAGCATCCGTTTTTCTTGTTAAGCATAATGCAATTCCTGCTATTTGTCAAAGATTAATG GCCATTGAATACTTGGATGTAGCTGAACAGTGCTTGCAAGCATTGGAGAAAATATCTCGCGATCAACCACTTCCATGCTTACAAGCTGGGGCAATAATGG CAGTTCTAAGTTTTGTAGACTTCTTCTCTACAAGTGTACAAAGAGTTGCACTTTCAACTGTGGTGAACATATGCAAGAAACTGCCATCAGAAAATTTTTC ACCATTCATGGAGGCTGTTCCGAGATTATGCAATCTTCTACAATATGAGGATAGGCAGCTTGTCGAAAATGTAGCAATTTGCTTGATCAAAATAGCAGAA CGGGTCAGTCAGTTGTCAGAGATGCTGGATGAACTATGCAAGCATGGACTAATTAATCAAGCTACTCATCTAGTGCAATTGAACAGCCGAACAACACTAT CTCAGCCAGTATACAATGGTTTGATTGGGCTTCTTGTCAAACTTTGTTCTGGTTCAGTTGTCGCCTTCAAGACCCTGTATGAGCTCAATATAAGCAGCAT TTTGAAGGACATATTAACTACTTATGACCTCTCGCATGGAATGTCTTCTCCACACGTGGTTGATGGGCAGGGTAACCAGGTACATGAAGTGCTAAAGTTG CTAAATGTGCTTCTCCCTATTATAGCAAGAGATCAAGACGTTCAACAGCATGTGTTGGATAAAGAGACATTTTTGGCTAATCACCCTAAGCTCTTGCAGA AGTTTGGATTGGATATAATTCCCTCGTTGATTCAGGTGGTTAATTCTGGTGCAAATCTATATGTTTGCTATGGCTGCTTATGTGTTATCAACAAGTTGGT TTATCTCAGCAAATCTGACATGCTTCTTGAGTTGCTTAAGAATACAAACATTCCAAGTTTTTTGGCTGGAGTTCTTACCCGTAAGGATCACCATGTGCTG ATGTTAGCCCTGCAAATTACTGAGACAATTCTCCAAAAGCTTCCAGATGTTTTTGTGAACTCTTTCATCAAGGAAGGTGTCTTTTTTGCCATTGATGCCC TTCTCGTGTCAGAAAAATGTTCTCAATTGATGTTCCCGGTGTGCAGTGGCATTCAGCTTCCAATCGATGCTAGTCTAAAATCTTCCTCAAAAGTAGTCAT GAGATGTTTATGTTATGCTTTTGATACTGGTCAGTCTCTTTCAACCACAGAAACAGGAACATGCAAGCTTGAAAAGGACAGTGTTCAAAATCTTGCAAAG CACATCAGAACTAGTTGCTTTGCTTCAGAATTATGCAACTCTGAGAAAGGATTGACAGATATCCTTCAGAAGCTTAGGGCTCTTTCAGCTGAATTGAGTG ATTTGATGAATATGCCTGGCAATATTGGCTCTTGCACTCAGGATGAGGAGAAATGTTATTGTGTGTTGCGTCAAATCATTGAAAAGCTTGATGGAAGAGA ACCTGTGTCTACTTTTGAATTCATTGAAAGTGGGATTGTGAAGATATTAGTGAATTACTTGTCCAGTGGCAAATATCTGAGAGAAAAGGTGGAGCCTCAG GGTACATTGGATGATTGCGACGTTATAGAGAAAAGATTTGAGGTGTTTGCAAGGCTACTTTTATCTTCCCCAGACCTATCTGTAGAGTTTCCTTTATCAG TTTTAATACAGAAATTGCAAGGTGCATTATCTTCTTTGGAGAATTTCCCTGTTATTTTGAGCCATGCATCCAAGCAAAGATCCTCGTTTGCAATCATTCC TACTGGACATTGCACATCTTATCCGTGCCTAAGAGTACGTTTTGTCAGGGGAAAGGGTGAGACATGCCTCTGCGACTACTCTGAAGATGTTGTGACAGTA GACCCTCTTTCTTCTGTGGATGCAATTGAAGGATATTTATCGCCTAAAGTTAGAATAAAAGGAACAGAGCAAATAGAATCAGCTGCTCAAGCTATAGAAG GCGCGTTGTCAGCAGAAAATGCACAGTTCAAATCACCATCAACTGCAAACTCCAGTCAAGGGGAAAGTTCAGGACTCATGGAGCCTGATAGTATTGCTAC TGATTTGCCTGTAATGCAGGAAGATGAAGCTAACCTATCTCAGTCTCCACCAGAACCAGATGTAAATTTGTTGCAGAGAAATCCTGATGAAACAACATCC TCAAATAATACTCATAATGTCTCAGTGGAGAAAATAGTGCAGTCTCCTTCATGTGCTGATGTCACTACAAAAGGTCATTGTCTTATGTCCTGTAGCAATG GAGATGCTCTGCCGAAACTGGTATTTTACCTAGAAGGGCAGCGGCTGGACCAAACTTTGACTCTTTACCAGGCAATTCTCCAGCAAAAAGTTAAAGCAGA CCGTGAAATTAACAGCACTGCAAAGCTGTGGACTCAAGTACACACCTTGACTTACGGAATGGTTGTGGACCCTAAAGATGATAGTCCTCCAGATCATTCT AGTACAGCTCAAAATTCCTCTATGTTAGATCAAGTTGGGGCTTATATGCAGCATCCTGCATTTTTCTCAAGCTTGTTTAATGGCGAACTCACTTCTGACC TGGATAAGTATAGTCCTACTAATGATGTATTGTTTCTGCTTAAAAGTTTAGAAGGTTTAAACAGGTTTATATTTCATCTGATGTCTCGTGAAAGAATCCA TGCATTTGCTGAAGGGCTGATTGATAATTTGGGTTATTTAAAGGTAGCAGTTCGCCCAGTATCACAAAATGAATTTGTGAGCTGTAAGTTGACCGAGAAA TTGGAGCAACAGATGCGGGATTCTCTGGCTGTGTCCATAGGTGGCATGCCTGTGTGGTGCAATCAGCTCATGGATTCATGCTCCTTTTTGTTTAGCTTTG AGGCTAGATGTAAATATTTCCGCTTGTCAGCATTCGGCCGTCAGCAAGTTCAACCACAGCCATCATCACATAATAATTCAGGTGTCTCAAGGGACGGACC ACCAAGTGCTGGCAGTTTGTCCCGTAAGAAATTCCTAGTTTTGCGTGACCGAGTTCTGGAGTCTGCTGCCCAGATGATGGATAGTTATGCTCATGTTAAA GCACCTATTGAAGTGGAATATAATGAAGAAGTTGGTACTGGTCTCGGTCCAACCTTGGAATTTTATACTCTGGTTAGTCGTGAGTTTCAGAAGTCTGGCC TTGGTATGTGGAGGCAGGATCATATTTCATTTACCACCAGCGAGACCCTGCAGGCTGAATACTCTGGAATTGTGAACTCTTCATTTGGACTTTTTCCTCG CCCATGGCCGTCTTCAGTGGATGCATCTGATGCGGCACAGTTTTCTGAAGTTATTAAAAAGTTTTTCCTTCTGGGACAAATTGTAGCCAAGGCTCTTCAA GATGGGAGGGTGCTGGATCTACCATTCTCTAAAGCCTTCTATAAGCTTATTCTTCAGCAGGAACTTAATTTGTATGACATCCAGTCCTTTGATCCCGAGC TTGGTAGGACATTGCTAGAGTTCCAGGCTCTTGTCAACAGGAAAAAAAATATGGGATCAGCCTTTGGAGAAAACTCATCTTCTGCTCTAGATGCATGCTT TTGGAACACCAAAATCGAGGATCTTTATCTTGACTTTACTCTTCCTGGGTATCCTGATTACGTTCTTAGTTTTGATGAAGATCACAAAATTGTGAATATG GTTAACTTGGATGCTTATGTTTCTCGCATTGTGGATGCTACTATACACACAGGAATTTCCAGACAAGTTGAAGCATTCAAGTCTGGATTTAACCAGGTTT TTCCTATTAAACATCTTATGATTTTCACCGAGGAGGAACTTGAGCGTTTGCTATGTGGAGAACGTGAATTTTGGGCTTTCAATGAGCTTTTGGACCATAT CAAGTTTGATCATGGATACACTGCTAGCAGCCCTCCTGTTGTTAATTTGCTGGAAATCATAAAGGAATTCGAATACGAACAACTACGATCATTTCTACAG TTTGTAACCGGGGCACCTCGGCTACCTACAGGAGGCTTGGCATCTCTGAATCCAAAATTGACCATTGTCCGGAAGCATTGTAGCAACTGTGCGGATGCGG ACCTTCCCAGTGTGATGACTTGTGCCAATTATCTGAAGTTGCCACCTTACTCGTCAAAAGACAAGATGAAAGAGAAACTTCTGTATGCCATAACAGAGGG TCAAGGATCATTCCACCTCTCGTAG
AA sequence Show only first row Show all	>Potri.006G132000.13 pacid=42770519 polypeptide=Potri.006G132000.13.p locus=Potri.006G132000 ID=Potri.006G132000.13.v4.1 annot-version=v4.1 MGNRGQKRAEMVNELPSDKRACSSLEFRPSSSNSSIQTQINSENHNAETHDADMDTSSSGSASSHSDEEEPERDSAYGSCDSEGPRHSSLREYQRQRSSG DHSRLRDCLSNLTEGTEPSGQLAALTELCEVLSFCTEDSLSSTMADSLSPVLVMLSRLESNPDIMLLAIRALTYLCDVFPRASVFLVKHNAIPAICQRLM AIEYLDVAEQCLQALEKISRDQPLPCLQAGAIMAVLSFVDFFSTSVQRVALSTVVNICKKLPSENFSPFMEAVPRLCNLLQYEDRQLVENVAICLIKIAE RVSQLSEMLDELCKHGLINQATHLVQLNSRTTLSQPVYNGLIGLLVKLCSGSVVAFKTLYELNISSILKDILTTYDLSHGMSSPHVVDGQGNQVHEVLKL LNVLLPIIARDQDVQQHVLDKETFLANHPKLLQKFGLDIIPSLIQVVNSGANLYVCYGCLCVINKLVYLSKSDMLLELLKNTNIPSFLAGVLTRKDHHVL MLALQITETILQKLPDVFVNSFIKEGVFFAIDALLVSEKCSQLMFPVCSGIQLPIDASLKSSSKVVMRCLCYAFDTGQSLSTTETGTCKLEKDSVQNLAK HIRTSCFASELCNSEKGLTDILQKLRALSAELSDLMNMPGNIGSCTQDEEKCYCVLRQIIEKLDGREPVSTFEFIESGIVKILVNYLSSGKYLREKVEPQ GTLDDCDVIEKRFEVFARLLLSSPDLSVEFPLSVLIQKLQGALSSLENFPVILSHASKQRSSFAIIPTGHCTSYPCLRVRFVRGKGETCLCDYSEDVVTV DPLSSVDAIEGYLSPKVRIKGTEQIESAAQAIEGALSAENAQFKSPSTANSSQGESSGLMEPDSIATDLPVMQEDEANLSQSPPEPDVNLLQRNPDETTS SNNTHNVSVEKIVQSPSCADVTTKGHCLMSCSNGDALPKLVFYLEGQRLDQTLTLYQAILQQKVKADREINSTAKLWTQVHTLTYGMVVDPKDDSPPDHS STAQNSSMLDQVGAYMQHPAFFSSLFNGELTSDLDKYSPTNDVLFLLKSLEGLNRFIFHLMSRERIHAFAEGLIDNLGYLKVAVRPVSQNEFVSCKLTEK LEQQMRDSLAVSIGGMPVWCNQLMDSCSFLFSFEARCKYFRLSAFGRQQVQPQPSSHNNSGVSRDGPPSAGSLSRKKFLVLRDRVLESAAQMMDSYAHVK APIEVEYNEEVGTGLGPTLEFYTLVSREFQKSGLGMWRQDHISFTTSETLQAEYSGIVNSSFGLFPRPWPSSVDASDAAQFSEVIKKFFLLGQIVAKALQ DGRVLDLPFSKAFYKLILQQELNLYDIQSFDPELGRTLLEFQALVNRKKNMGSAFGENSSSALDACFWNTKIEDLYLDFTLPGYPDYVLSFDEDHKIVNM VNLDAYVSRIVDATIHTGISRQVEAFKSGFNQVFPIKHLMIFTEEELERLLCGEREFWAFNELLDHIKFDHGYTASSPPVVNLLEIIKEFEYEQLRSFLQ FVTGAPRLPTGGLASLNPKLTIVRKHCSNCADADLPSVMTCANYLKLPPYSSKDKMKEKLLYAITEGQGSFHLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	0	1
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	1.00	0.8215
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	1.41	0.7998
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	7.74	0.7570
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	8.06	0.7643	Pt-FRD3.1
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	8.12	0.7477
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	11.22	0.7526
AT4G10730			Protein kinase superfamily pro...		Potri.001G084700 [exp]	12.04	0.7098
AT3G10250			Plant protein 1589 of unknown ...		Potri.016G038100 [exp]	12.32	0.7660
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Potri.012G066300 [exp]	12.96	0.7284	ATDGK1.1
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	15.29	0.7717

Compare expression of checked genes

Potri.006G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.