Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 1318 / 0 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 821 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G51880 460 / 5e-148 RHS6 root hair specific 6 (.1) AT2G14510 454 / 6e-146 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 448 / 1e-143 Leucine-rich repeat protein kinase family protein (.1) AT1G51860 448 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 444 / 9e-142 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 441 / 2e-140 Leucine-rich repeat protein kinase family protein (.1.2) AT2G28960 438 / 1e-139 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 437 / 5e-139 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084900 [exp] 1644 / 0 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.010G052800 [exp] 852 / 0 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G181200 [exp] 847 / 0 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G004700 [exp] 440 / 1e-139 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.019G094600 [exp] 429 / 4e-136 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 428 / 2e-135 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.002G242700 [exp] 419 / 6e-132 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094700 [exp] 410 / 6e-129 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 347 / 1e-109 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019907 [exp] 1420 / 0 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10023166 [exp] 1393 / 0 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10015057 [exp] 1379 / 0 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 819 / 0 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 816 / 0 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025849 [exp] 425 / 2e-134 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10019237 [exp] 412 / 5e-129 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025926 [exp] 386 / 1e-119 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 364 / 9e-112 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004275 [exp] 327 / 8e-98 AT2G37050 374 / 3e-115 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.006G132100.1 pacid=42769105 polypeptide=Potri.006G132100.1.p locus=Potri.006G132100 ID=Potri.006G132100.1.v4.1 annot-version=v4.1 ATGGGGTCTAGGCTTCTGCTTCTTTTCTCTCTTCTTCTCTTCGTCTTCGTCCACGCCTCCTCAGCTCAGCCTGGTTTTCTGAGTTTGGACTGTGGGGGCC CAGTAAATTTCACTGATGATCTTGGACTGTCGTGGACTTCAGATTTTAATTTTAGTTACGGAGCAGCAGCAAGCATATCAGTTGCAAATGAGACACGGAA GCAGTATACTACAGTGAGACATTTCCCTGCAGATTCCAGGAAGTACTGTTATAGACTGGATGTCACTAGTAGAACAAGATACCTTTTAAGGGCAACCTTC TTGTATGGTAACTTTGACAGCAATAACGTTTATCCAAAATTTGACATTTCTGTTGGGCCAACTCATTGGTCTACAATTGTCATTTCTGATGCTAATACCA TAGAGTCTACAGAGCTAATATTTCTGGCCTCAAGTTCTTCTATGAGTGTATGCCTATCGAATGCTACAACCGGGCAGCCATTCATATCTACCCTTGAGCT CCGACAGTTCAATGGTTCAGTTTATTATACAGAATTTGAAAACCAGTTTTATCTCAGTATGTCAGCCAGAATCAATTTTGGTGCAGATAACGAGGCTCCA ATTAGGTATCCTGATGATCCATACGATAGAATATGGGAGTCCGACTCTGTGAAGAAAGCTAATTATCTAGTTGATGTTGCAGCTGGTACCAAGAAAGTAT CAACTGACATGCCTATTGACGTCAACATTGATGAAAGGCCTCCTGAAAGAGTGATGCAAACAGCTGTAGTCGGCACAAATGGATCACTAACATATCGGTT GAACTTGGATGGTTTTCCTGGTTTTGGGTGGGCTGTCACATACTTCGCTGAAATTGAAGATCTGGATCCTGAGGAGTCCAGAAAATTCAGGCTGGTACTC CCAGGGTACCCTGATATGAGCAAAGCTATTGTCAATATCGAAGAAAATGCTCAAGGAAAATATCGTCTTTATGAACCTGGATATACCAACCTGTCCTTAC CCTTCGTATTATCTTTTAGATTTGGAAAGACTTCCGATTCTTCCAGGGGACCACTTGTGAATGCGATGGAGATACACAAGTATCTTGAGAAAAATGATGG TACCCTAGATGGATATGTTATTTCTCGTGTTATTTTATCCCACTCAACAGAAGATTGGGCACAAGAAGGCGGTGACCCATGCCTGCCAGTTCCATGGTCA TGGGTGCAGTGTAACTCTGATGCCAGGCCAAGGATTGTTAAGCTCTCTTTGTCTAGCAAGAATTTGTCTGGGAATGTTCCGTCAGGCTTGACGATGTTGA CAGGTTTAGTTGAATTATGGCTCGATGGAAATTCACTGACTGGTCCTATTCCTGATTTTACTGGATGCACAGGCTTGGAGATCATTCATCTCGAGAACAA TCAGTTGACGGGTGAGCTGCCATCCTCCTTACTGAACCTACCAAATTTGAGGGAACTATATGTGCAAAATAATTTGTTATCTGGAACAATACCATCGGGT CTCAGTAGAAAGGTGGCTTTGAACTACTCTGGAAACATTAATCTTCGTGAAGGAGCCAGAAGAGGGAGGCACATGGATATTATTATCGGTTCGTCAGTTG GAGCTGCTGTTCTTCTCATAGCTACAATAGTGTCTTGCTTGTTCATGCACAAAGGAAAGAAAAGACACCCTGACCAAGAGCAACTTCGGGATTCCCTGCC CATGCAAATGGTAGTTTCTTCCTTGAGAAATGCTCCTGGTGAAGCTGCTCACTGTTTCACAACCTTTGAAATTGAAGATGCTACAAAAAAGTTCGAGAAG AAAATAGGCTCTGGAGGTTTTGGAGTTGTGTACTATGGAAAAATGAAAGATGGAAGGGAAATTGCAGTGAAAGTTCTAACTAGCAATTCCTACCAGGGAA AGCGAGAGTTTACAAATGAGGTGACTCTTCTTTCAAGGATACATCACAGAAACCTGGTACAATTTCTTGGATATTGTCAAGAAGATGGGAAGAGCATGCT TGTTTATGAGTTCATGCACAATGGAACACTTAAGGAACATCTTTACGGTCCGTTAAAACGAGGAAAAAGTATTAATTGGATCAAGCGCCTTGAGATTGCT GAAGATGCTGCTAAAGGGATTGAATATCTTCATACAGGTTGTGTTCCAGCCATTATCCATAGGGATTTAAAAAGCAGCAATATTCTTGTTGACAAAAACA TGAGAGCTAAGGTTGCAGATTTTGGCCTTTCAAAACTTGCAGTAGATGGAGCTTCACACGTATCTAGCATAGTTCGAGGCACCGTAGGGTATTTGGATCC CGAGTATTACATCTCTCAACAGTTAACAGACAAGAGTGATGTTTATAGTTTTGGTGTCATTCTCCTGGAGCTGATGTCTGGTCAAGAAGCCATATCTAAT GAAAGCTTTGGTGTAAATTGTCGCAATATAGTACAATGGGCAAAATTACACATTGAGAGTGGGGATATCCAAGGAATCATCGATCCCTCACTGTGTGGTG AATATGACATCCAGTCAATGTGGAAGATAGCAGAGAAAGCTTTGATGTGTGTCCAGCCTCATGGTCACATGAGGCCATCTATTTCAGAAGTTCTCAAGGA GATCCAAGATGCTATCTTAATTGAAAGGGAGGTGACAGCAGCAAGAGAAGATATCTCTGATGAAATGTCGAGAAATTCTGTTCATTCTTCACTCAACTTG GGTTCTTTGGATTTGGGTGGAGCCGAGAATTACCTGGCGCTTGACGAGTCCATTGCACAGCCAACCGCCAGATGA
AA sequence Show only first row Show all	>Potri.006G132100.1 pacid=42769105 polypeptide=Potri.006G132100.1.p locus=Potri.006G132100 ID=Potri.006G132100.1.v4.1 annot-version=v4.1 MGSRLLLLFSLLLFVFVHASSAQPGFLSLDCGGPVNFTDDLGLSWTSDFNFSYGAAASISVANETRKQYTTVRHFPADSRKYCYRLDVTSRTRYLLRATF LYGNFDSNNVYPKFDISVGPTHWSTIVISDANTIESTELIFLASSSSMSVCLSNATTGQPFISTLELRQFNGSVYYTEFENQFYLSMSARINFGADNEAP IRYPDDPYDRIWESDSVKKANYLVDVAAGTKKVSTDMPIDVNIDERPPERVMQTAVVGTNGSLTYRLNLDGFPGFGWAVTYFAEIEDLDPEESRKFRLVL PGYPDMSKAIVNIEENAQGKYRLYEPGYTNLSLPFVLSFRFGKTSDSSRGPLVNAMEIHKYLEKNDGTLDGYVISRVILSHSTEDWAQEGGDPCLPVPWS WVQCNSDARPRIVKLSLSSKNLSGNVPSGLTMLTGLVELWLDGNSLTGPIPDFTGCTGLEIIHLENNQLTGELPSSLLNLPNLRELYVQNNLLSGTIPSG LSRKVALNYSGNINLREGARRGRHMDIIIGSSVGAAVLLIATIVSCLFMHKGKKRHPDQEQLRDSLPMQMVVSSLRNAPGEAAHCFTTFEIEDATKKFEK KIGSGGFGVVYYGKMKDGREIAVKVLTSNSYQGKREFTNEVTLLSRIHHRNLVQFLGYCQEDGKSMLVYEFMHNGTLKEHLYGPLKRGKSINWIKRLEIA EDAAKGIEYLHTGCVPAIIHRDLKSSNILVDKNMRAKVADFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELMSGQEAISN ESFGVNCRNIVQWAKLHIESGDIQGIIDPSLCGEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEREVTAAREDISDEMSRNSVHSSLNL GSLDLGGAENYLALDESIAQPTAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37050			Leucine-rich repeat protein ki...		Potri.006G132100 [exp]	0	1
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	4.69	0.7773
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Potri.004G236500 [exp]	4.79	0.7916
AT1G54200			unknown protein		Potri.003G063400 [exp]	5.74	0.7757
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G035500 [exp]	6.00	0.7338	SFB1.2
AT1G09660			RNA-binding KH domain-containi...		Potri.004G225900 [exp]	6.63	0.7122
					Potri.001G137000 [exp]	6.78	0.7122
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	8.77	0.7318	RDR904
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	10.00	0.7336
AT3G52480			unknown protein		Potri.006G204400 [exp]	10.19	0.7384
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	12.44	0.7527

Compare expression of checked genes

Potri.006G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.