Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APX1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09640 441 / 3e-159 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT1G07890 421 / 3e-151 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT4G35000 338 / 1e-117 APX3 ascorbate peroxidase 3 (.1) AT4G35970 294 / 2e-100 APX5 ascorbate peroxidase 5 (.1) AT4G08390 218 / 1e-69 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT1G77490 216 / 4e-68 TAPX thylakoidal ascorbate peroxidase (.1) AT4G32320 141 / 2e-40 APX6 ascorbate peroxidase 6 (.1) AT4G16270 85 / 6e-19 Peroxidase superfamily protein (.1) AT4G17690 82 / 3e-18 Peroxidase superfamily protein (.1) AT4G30170 78 / 1e-16 Peroxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084800 [exp] 488 / 8e-178 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.009G015400 [exp] 453 / 7e-164 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.005G112200 [exp] 330 / 8e-115 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 325 / 1e-112 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 322 / 2e-111 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.005G179200 [exp] 220 / 1e-69 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 216 / 3e-68 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G089000 [exp] 177 / 7e-57 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G254500 [exp] 138 / 5e-39 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013537 [exp] 434 / 3e-156 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10019906 [exp] 427 / 1e-153 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10015970 [exp] 426 / 1e-152 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10014128 [exp] 333 / 5e-116 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 328 / 4e-113 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 293 / 5e-100 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 270 / 8e-91 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10025680 [exp] 219 / 4e-69 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 202 / 2e-62 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 140 / 3e-40 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.006G132200.3 pacid=42769279 polypeptide=Potri.006G132200.3.p locus=Potri.006G132200 ID=Potri.006G132200.3.v4.1 annot-version=v4.1 ATGGGCAAGAGCTACCCTACAGTGAGTGAAGAGTATCAGAAAGCAGTGGAGAAATGCAAGAGGAAACTCAGAGGCCTCATCGCTGAAAAACATTGCGCTC CTCTCATGCTCAGATTAGCATGGCATTCTGCTGGTACGTTTGATGTCCATACAAAGACAGGAGGACCGTTCGGTACGATCAGACACCCAGATGAGCTTGC TCATGGAGCTAACAATGGTCTTGATATTGCTATCAGGCTTTTGGAACCCATCAAAGAACAATTCCCCATCTTGTCTTATGCTGACTTCTACCAATTAGCT GGTGTTGTTGCTGTTGAAGTTACAGGAGGGCCTGAGATTCCTTTTCACCCTGGGAGACCAGACAAGTCTGATCCACCTCCAGAAGGTCGCTTGCCTGATG CAACCAAAGGTTCAGACCATTTAAGGGATGTATTTGGCCACATGGGTCTCAGTGACACAGATATTGTTGCCCTATCCGGTGGTCACACTCTGGGGAGGTG CCATAAGGAGCGTTCTGGATTCGAGGGACCCTGGACCCCCAACCCACTTGTTTTCGACAACTCCTATTTCAAGGAACTCCTCAGTGGAGAGAAAGAAGGT CTTATCCAGCTTCCATCAGACAAAACTCTTCTGGAGGATCCAGTCTTCCGTCCCCTTGTTGAAAACTATGCTGAAGATGAGGATGCATTCTTTGCAGATT ATTCAGAAGCTCATTTGAAGCTGTCGGAGCTTGGATATGCTGATTCTTAG
AA sequence Show only first row Show all	>Potri.006G132200.3 pacid=42769279 polypeptide=Potri.006G132200.3.p locus=Potri.006G132200 ID=Potri.006G132200.3.v4.1 annot-version=v4.1 MGKSYPTVSEEYQKAVEKCKRKLRGLIAEKHCAPLMLRLAWHSAGTFDVHTKTGGPFGTIRHPDELAHGANNGLDIAIRLLEPIKEQFPILSYADFYQLA GVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPDATKGSDHLRDVFGHMGLSDTDIVALSGGHTLGRCHKERSGFEGPWTPNPLVFDNSYFKELLSGEKEG LIQLPSDKTLLEDPVFRPLVENYAEDEDAFFADYSEAHLKLSELGYADS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.006G132200 [exp]	0	1	APX1.2
AT1G30540			Actin-like ATPase superfamily ...		Potri.014G143500 [exp]	1.00	0.8577
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.004G089500 [exp]	4.24	0.8292
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.003G128500 [exp]	5.00	0.8158
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	6.32	0.8029
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	8.24	0.8304
AT5G10980			Histone superfamily protein (....		Potri.002G026800 [exp]	12.72	0.7513	HTR908
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	12.96	0.7729
AT5G12240			unknown protein		Potri.009G069000 [exp]	14.69	0.8158
AT2G39805			Integral membrane Yip1 family ...		Potri.008G060300 [exp]	15.65	0.8071
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.002G082500 [exp]	16.97	0.7468

Compare expression of checked genes

Potri.006G132200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.