Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RHL2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02820 700 / 0 BIN5, RHL2 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) AT3G13170 226 / 3e-70 ATSPO11-1 Spo11/DNA topoisomerase VI, subunit A protein (.1) AT1G63990 205 / 4e-62 SPO11-2 sporulation 11-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366700 [exp] 226 / 2e-70 AT3G13170 499 / 2e-178 Spo11/DNA topoisomerase VI, subunit A protein (.1) Potri.001G099100 [exp] 185 / 2e-54 AT1G63990 603 / 0.0 sporulation 11-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003996 [exp] 718 / 0 AT5G02820 720 / 0.0 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10015052 [exp] 494 / 4e-176 AT5G02820 495 / 2e-176 ROOT HAIRLESS 2, BRASSINOSTEROID INSENSITIVE 5, Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10004416 [exp] 172 / 1e-49 AT3G13170 479 / 2e-170 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10016612 [exp] 145 / 7e-38 AT3G13170 423 / 7e-145 Spo11/DNA topoisomerase VI, subunit A protein (.1) Lus10024675 [exp] 123 / 2e-32 AT1G63990 287 / 5e-97 sporulation 11-2 (.1) Lus10032302 [exp] 107 / 5e-27 AT1G63990 253 / 8e-84 sporulation 11-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04406 [poplar] [flax] TP6A_N Type IIB DNA topoisomerase
Representative CDS sequence Show only first row Show all	>Potri.006G132600.1 pacid=42769395 polypeptide=Potri.006G132600.1.p locus=Potri.006G132600 ID=Potri.006G132600.1.v4.1 annot-version=v4.1 ATGGCCGACAGCACCTCCACCAAATCCAGAAAACGCCGCCAACCCGACCCAGACTCCACCACCGAACTCCTCTTCAAAAACCTCCTAAAACCCGACTCTG TAATCCTCCAAACTCTACAATCCCTCGTAATCTCCACTGCATCCGCCTCCTCTTCAAAACCCCTCACTCTCTCCGACCTATCACTCTCTTCCAGCTGTCG AGAAGTCGCCGACCTCTCCCTTACCTCTGTCCAATCTGAGATCGAAGCCTTAACCATCTCCATCGTCCAATCAATCCTCTCCGGTAAGGGCTTCTCCTTC AATGTCCCCTCACGGTCTGCCACTAACCAACTCTATGTCCCGGAACTCGACCGCATTGTCTTAAAAGACAAAAATACCCTCCGCCCTTTCGCTAACATTT CATCAGTCCGCAAATGCACAATAACTGCAAGGATCCTTTCCTTAATCCACCAGCTTTGTCTAAAAAGCATTCATGTTACAAAGCGAGATTTGTTTTACAC TGATGTGAAGTTGTTTCAGGATCAGACACAGTCTGACGCTGTTCTTGATGATGTTTCGTGTATGCTTGGGTGTACTAGGTCTTCTCTTAACGTGATTGCG GCGGAGAAGGGGGTGGTTGTTGGGAGATTGATTTTTAGTGATAATGGGGATATGATTGATTGCACCAAAATGGGAATGGGAGGGAAAGCGATTCCACCGA ATATTGATAGAGTTGGGGATATGCAGAGTGATGCATTATTTATTTTGTTAGTTGAGAAGGATGCTGCATATATGAGGTTAGCTGAGGATAGGTTTTACAA TCGTTTTCCATGTATTATTGTGACTGCGAAAGGGCAGCCGGATGTGGCTACAAGGCTTTTTTTAAGGAAAATGAAGACCGAATTGAAGCTGCCGGTTTTG GCATTAGTTGATAGTGATCCATATGGGTTGAAGATTTTATCTGTTTATGGCTGTGGGTCGAAGAATATGTCTTATGATAGTGCGAATTTGACCACACCGG ATATCAAATGGCTGGGGATTAGGCCTAGTGATTTGGACAAGTATAAGATACCTGAGCAATGTAGGTTGCCGATGACTGAGCAGGATATCAAGACTGGGAA GGATTTGTTGGAGGAGGATTTCGTGAAGAAGAATCCAGGGTGGGTTGAGGAGTTGAGTTTGATGGTGAAGACTAAACAGAAGGCTGAGATTCAGGCTCTG AGTTCGTTTGGGTTTCAGTATTTATCTGAGGTTTATTTGCCTTTGAAGTTGCAGCAGCAGGATTGGCTTTGA
AA sequence Show only first row Show all	>Potri.006G132600.1 pacid=42769395 polypeptide=Potri.006G132600.1.p locus=Potri.006G132600 ID=Potri.006G132600.1.v4.1 annot-version=v4.1 MADSTSTKSRKRRQPDPDSTTELLFKNLLKPDSVILQTLQSLVISTASASSSKPLTLSDLSLSSSCREVADLSLTSVQSEIEALTISIVQSILSGKGFSF NVPSRSATNQLYVPELDRIVLKDKNTLRPFANISSVRKCTITARILSLIHQLCLKSIHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIA AEKGVVVGRLIFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMQSDALFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKTELKLPVL ALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDLLEEDFVKKNPGWVEELSLMVKTKQKAEIQAL SSFGFQYLSEVYLPLKLQQQDWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Potri.006G132600 [exp]	0	1	Pt-RHL2.1
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G245400 [exp]	3.46	0.8632
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	5.29	0.8549
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.006G149400 [exp]	6.24	0.8099
AT4G33400			Vacuolar import/degradation, V...		Potri.014G029600 [exp]	6.32	0.8236
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Potri.005G152200 [exp]	6.32	0.8303
AT5G63630			P-loop containing nucleoside t...		Potri.002G169800 [exp]	6.32	0.8375
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	6.48	0.8319
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Potri.015G135800 [exp]	6.92	0.7918	RSP40.2
AT1G30880			unknown protein		Potri.003G155400 [exp]	7.74	0.8075
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	8.77	0.8148	PRMT901

Compare expression of checked genes

Potri.006G132600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.