Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02830 890 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 142 / 1e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 138 / 2e-33 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G04810 134 / 5e-32 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 130 / 3e-31 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G19440 129 / 1e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G12100 126 / 1e-29 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G31850 123 / 2e-28 PGR3 proton gradient regulation 3 (.1) AT1G62680 120 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 119 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G166600 [exp] 134 / 5e-32 AT4G34830 1044 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 131 / 3e-31 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123600 [exp] 124 / 1e-28 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G017400 [exp] 122 / 2e-28 AT5G04810 1278 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G264800 [exp] 122 / 2e-28 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.010G241300 [exp] 122 / 4e-28 AT5G04810 1230 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G118500 [exp] 122 / 4e-28 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.010G014100 [exp] 121 / 4e-28 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 119 / 9e-28 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015053 [exp] 836 / 0 AT5G02830 769 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 146 / 1e-35 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 142 / 2e-34 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022290 [exp] 131 / 4e-31 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 129 / 1e-30 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10033127 [exp] 128 / 5e-30 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10026747 [exp] 125 / 4e-29 AT1G06710 1190 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043417 [exp] 121 / 6e-28 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025533 [exp] 120 / 8e-28 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012180 [exp] 121 / 9e-28 AT4G34830 800 / 0.0 PIGMENT DEFECTIVE 346, MATURATION OF RBCL 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G132700.1 pacid=42766951 polypeptide=Potri.006G132700.1.p locus=Potri.006G132700 ID=Potri.006G132700.1.v4.1 annot-version=v4.1 ATGAAACAACTCCTCATCCTCGGCTCCTCCACTGTTACTCCTCCGACAAACCCCTCCTCCACTCCTCACCACCACCACCACTCTCCGAAACCCAAACCCA AAACCCCATCACTCCACGCTCCCTCCAAACCAATCCCTGCCGTCCATTCCCGCTCTCCTCCTCTCCTCTCCACCATCCCATTTCGCCAAAACCATAACTC CTCCTCCCTCCTCGATTACCATGCCAACCTTGCTTCAAAGCTAGCCGAGGATGGCCGCCTCCAAGACTTTGTGATGATTGCAGAGTCAGTGATTGCTTCA GGTGTCGAGCCTTCAAGTTTTGTTGCTGCATTAAGTGTGGGTCCTGTGGCAAAGGGTATTTCAAAGAATCTTCAACAAGGAAATGTAGACTGTGTTGTTC GGTTTTTGAAAAAAACTGAGGAACTGGGAGTTTCCACTTTGAAGTTTCTTGATGGGGTTGCTATTGATTTGCTTAAAAAAGAGTTTATCAGGATTGTGAA TTGTGGTGATGTGGAGCAAGTTGTATACATAATGGAGACTCTTGCTGGGTTTTGCTTCTCCTTCAAAGAACTAGTGGACCCATCTTACATCATAAAAATC TGTGTTGACAAGCTTAATCCAAAGATGGCTGTGCGGTATGCAGCTATATTTCCAGGTGAAGGACGCATATTATTTTGCAACATTATAAGTGAATTTGGAA GAAAAGGGCACCTGGATTCTGCTTTGGTTGCCTATGATGAAGCTAAGCATAAATTGAGTGTTCCTAACATGTATTTACATCGTACTATAATTGACGTCTG TGGTCTTTGTGGTGACTACATGAAATCTAGGTATATTTATGAGGACTTGATTAATCGGAAGGTCATCCCAAATGTTTATGTTTTCAACAGTCTCATGAAT GTCAATGCCCATGATTTGGGCTACACATTCAGTGTATTCAAGAATATGCAAAATCTTGGTGTCACAGCAGATGTGGCATCTTATAACATCCTGTTGAAGG CATGCTGTATTGCTGGAAGAGTGGACTTAGCCAAAGACATTTATAGGGAAGTAAAGCAGTTGGAATCAGCAGAAGTGTTGAAGTTGGATGTCTTTACATA CTGCATGATCGTAAAGATCTTTGCAGATGCAAAAATGTGGCAGATGGCACTTAAAATTAAAGAAGATATGCTATCATCCGGAGTCACCCCTAACATGCAT ATATGGTCATCGTTGATCAGTGCATGCGCCAATGCAGGTCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAGATGCTCCTATCTGGATGCAAGCCAAATT CTCAGTGTTGCAACATCCTTTTACATGCATGTGTTCAGGCTTGTCAATATGACAGAGCTTTTCGTCTTTTCCAGTGCTGGAAGGGAAGTGAAGCCCAGGA GGTTTTTCATGGAGATCACAGTGGCAATGCAGATGAGATTGAGCATGCACAGAAACACTGCCCTAACATGACTACCATTGTTCCAAATTCACATCATTTA AACTTTATTAAGAAATTTCCCTTCACTCCCACTCCCGCAACATATCATATGTTAATGAAAGCATGTGGTAGCGATTACCACCGTGCAAAAGCCTTAATGG ATGAGATGAAGACAGTAGGAATTTCACCTAATCATATAAGCTGGTCAATCTTGATTGACATATGTGGAGTCTCAGGCAATGTATCTGGTGCTGTACAGAT TTTGAAGAACATGCGCATGGCTGGAGTTGAACCTGATGTTGTTGCATATACAACAGCTATCAAGGTTTGTGTAGAAACTAAAAATTTGAAGCTGGCATTT TCGTTATTTGCAGAAATGAAAAGATGTCAGATAAATCCTAATTTGGTGACATATAATACACTTCTAAGAGCTCGCACTAGATATGGTTCCTTGCGAGAAG TACAACAATGCCTTGCTATATACCAGGATATGAGGAAAGCAGGGTATAAATCAAATGACTACTATCTCAAACAGCTAATTGAAGAATGGTGTGAAGGAGT AATACAAGATAATAATCAGATCCAGGGTGGGTTTGCTTCTTGTAAAAGAACTGACTTAGGAAGACCTCGTAGTCTACTTCTTGAGAAAGTTGCAGCACAC TTGCAGAACAATATTTCTGAAAACCTAGCAATTGACCTCCAGGGACTGACAAAGGTTGAAGCTCGGATTGTAGTTCTTGCAGTTCTTCGAATGATCAAAG AGAACTATACTTTAGGTTATTCAGTAAAAGAAGACATGTGGATCACCTTGGATGTCAGTAAAGTAGATCCGGCATCCAAACGAGATTCAGAGGTGAAAAA TGCAATAATTGAACTTCTGCGGAATGAGTTAGGGCTTGAGGTTCTGGTTGCAGTCCCAGGACATTTAGATGACATAAAGACAGATTCGAAAAGCTCTCTA GATCCAGGTCCGGACTTGGTAGTGAGGTTAGCAAGGAACAATAAAATGGCATCTTCCACAAGACGCCCCATAGTAGTTACACAGAGGTTGAAGGTTAGAC GGAAATCACTGCATGAATGGCTGCAGAGAAGAGCAGGTGCCATCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.006G132700.1 pacid=42766951 polypeptide=Potri.006G132700.1.p locus=Potri.006G132700 ID=Potri.006G132700.1.v4.1 annot-version=v4.1 MKQLLILGSSTVTPPTNPSSTPHHHHHSPKPKPKTPSLHAPSKPIPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIAS GVEPSSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIRIVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKI CVDKLNPKMAVRYAAIFPGEGRILFCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLINRKVIPNVYVFNSLMN VNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLAKDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMH IWSSLISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSEAQEVFHGDHSGNADEIEHAQKHCPNMTTIVPNSHHL NFIKKFPFTPTPATYHMLMKACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDVVAYTTAIKVCVETKNLKLAF SLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAIYQDMRKAGYKSNDYYLKQLIEEWCEGVIQDNNQIQGGFASCKRTDLGRPRSLLLEKVAAH LQNNISENLAIDLQGLTKVEARIVVLAVLRMIKENYTLGYSVKEDMWITLDVSKVDPASKRDSEVKNAIIELLRNELGLEVLVAVPGHLDDIKTDSKSSL DPGPDLVVRLARNNKMASSTRRPIVVTQRLKVRRKSLHEWLQRRAGAIRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	0	1
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	1.41	0.9661
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	3.00	0.9632
AT1G69523			S-adenosyl-L-methionine-depend...		Potri.008G088500 [exp]	3.46	0.9594
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	4.24	0.9575
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	4.24	0.9654
AT2G13440			glucose-inhibited division fam...		Potri.005G066300 [exp]	4.79	0.9491
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.019G014376 [exp]	5.29	0.9538
AT5G04440			Protein of unknown function (D...		Potri.008G030300 [exp]	5.38	0.9473
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	7.48	0.9581
AT1G53800			unknown protein		Potri.003G073400 [exp]	9.79	0.9529

Compare expression of checked genes

Potri.006G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.