Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37260 332 / 9e-110 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G03340 243 / 2e-74 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 241 / 1e-73 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G56270 230 / 7e-68 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 222 / 5e-66 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G12020 167 / 2e-44 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT5G07100 130 / 3e-35 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 137 / 4e-35 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT4G26640 132 / 2e-33 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT3G01080 126 / 1e-31 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083600 [exp] 731 / 0 AT2G37260 337 / 4e-112 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 260 / 4e-81 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 250 / 2e-77 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.011G169300 [exp] 252 / 5e-76 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.004G120800 [exp] 243 / 5e-74 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.001G361600 [exp] 236 / 2e-71 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G086000 [exp] 234 / 2e-69 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 229 / 1e-68 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.001G472800 [exp] 231 / 4e-68 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032887 [exp] 243 / 1e-72 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 241 / 6e-72 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10015377 [exp] 227 / 6e-68 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10026838 [exp] 230 / 7e-68 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10042243 [exp] 222 / 2e-66 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10006368 [exp] 200 / 4e-58 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10033000 [exp] 187 / 3e-53 AT2G03340 367 / 1e-121 WRKY DNA-binding protein 3 (.1) Lus10019898 [exp] 167 / 1e-46 AT5G56270 229 / 1e-71 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10000173 [exp] 149 / 8e-41 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10037131 [exp] 150 / 2e-40 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G133200.11 pacid=42768764 polypeptide=Potri.006G133200.11.p locus=Potri.006G133200 ID=Potri.006G133200.11.v4.1 annot-version=v4.1 ATGGAGATCAAGGAATCAGAGAGGGTGGTTATAGCTAAACCAGTAGCTTCCAGGCCTAGTTACTCAAATTTTACGTCTTTCTCAGAGTTGCTTGCGGGTG CCATCAATACCACACCCTCTAATGTTTGTTCTGGAACAGCAGTTGCTGCCATTAGACCAAAAACAGTGAGGTTCAGGCCACTGGTGAATCGTGCTCCAGG TGCACTGGTTTCTTCACAGGCTGGACTCTCTGGAACAGCAGTTAGCAATTCGTTTAATAAAGCTTCAAGTACTGATAGCAAAGCCACTATCATATATAAA CCACAGGCAAAGCTTGTGTCAAAGGCAACTGTTTCTCTACTGGCGAATATGGGAAACTTCAATACTAATTCACAACAAATGTTACAACCAGTTGAGACTC GTCCTCAGCTTTCAAAACAAGATAAACACAATTTCTCATCCCAGCTTACCTCAAATCCTCATCAGAATATTCCATCCCCTGCAGAAGCAGACCACACAAC TGAACCCTTAAGGTTAACATCTCTGAACCAGGAGGAGGATCCTAAAACTTTATCTCATGCATCTAATGGGGACCGACCTTCATATGATGGTTATAATTGG AGGAAATATGGACAAAAGCAAGTAAAAGGAAGTGAATATCCACGGAGCTACTACAAGTGCACCTATCCAAACTGTCCAGTGAAAAAGAAGGTCGAAAGAT CATTTGACGGGCAGATTGCAGAAATTGTCTACAAAGGGGAACACAACCATTCAAAGCCTCAGCCTCCAAAGCGCAACTCATCAGGAACACAAGGACTATC TGATGGCAATGCTACAGATAGGAACAGCATCCCATTATGGAGTAATCAACTCAATGAAAGAAATGAAGGCTCTGAAGGTAGAGAAGAAAATCAGAATGAA ATTGGATTACCAGTGCATTCAATTTATCAGGGTAAAGCTCCACCATCTTATGATCCTGCTGGAACCGGCACAATTAATGCTGGTACGGGAACTTCTGATA ACTCATGTGGTGTCAGCGGGGAATGTGATGATGGAAGCAAGGGATTGGAGGGAGCCAATGATGAACCTAAAAGTAAAAGAAGGAAAACTGAGATACAATC CACTGAAGGTGGCATGTCAGGGGAGGGAGTACAAGAGCCCCGTGTAGTGGTGCAAAGTTCCACAGATTCTGAGATTTTGGGGGATGGTTTTCGATGGAGA AAATATGGGCAGAAGATTGTGAAGGGGAATCCATATCCCAGGAGTTACTATAGATGTACCAGTATCAAATGCAATGTTCGCAAGCATGTGGAAAGAGTAT CAGATGATCCAAGAGCTTTTATTACAACATATGAAGGAAAACATAACCATGAGATCCCTCTGAAGAGCACAAACCTAGCAGCCTTTGAACCTGATTCACA GGCACCTACTACTAGAGTCAAGCAGTGA
AA sequence Show only first row Show all	>Potri.006G133200.11 pacid=42768764 polypeptide=Potri.006G133200.11.p locus=Potri.006G133200 ID=Potri.006G133200.11.v4.1 annot-version=v4.1 MEIKESERVVIAKPVASRPSYSNFTSFSELLAGAINTTPSNVCSGTAVAAIRPKTVRFRPLVNRAPGALVSSQAGLSGTAVSNSFNKASSTDSKATIIYK PQAKLVSKATVSLLANMGNFNTNSQQMLQPVETRPQLSKQDKHNFSSQLTSNPHQNIPSPAEADHTTEPLRLTSLNQEEDPKTLSHASNGDRPSYDGYNW RKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQPPKRNSSGTQGLSDGNATDRNSIPLWSNQLNERNEGSEGREENQNE IGLPVHSIYQGKAPPSYDPAGTGTINAGTGTSDNSCGVSGECDDGSKGLEGANDEPKSKRRKTEIQSTEGGMSGEGVQEPRVVVQSSTDSEILGDGFRWR KYGQKIVKGNPYPRSYYRCTSIKCNVRKHVERVSDDPRAFITTYEGKHNHEIPLKSTNLAAFEPDSQAPTTRVKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.006G133200 [exp]	0	1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	1.73	0.8503
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	7.21	0.8320
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	7.61	0.8397
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	17.88	0.7850	Pt-TCP1.1
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Potri.017G142800 [exp]	17.94	0.7967	FRO2.1
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Potri.006G221000 [exp]	20.71	0.7626
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.002G059200 [exp]	20.73	0.8016
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.005G208600 [exp]	22.24	0.8383
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	22.75	0.8078
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	32.63	0.7880	GL2.2

Compare expression of checked genes

Potri.006G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.