Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02800 566 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 550 / 0 Protein kinase superfamily protein (.1.2) AT5G13160 513 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 512 / 0 Protein kinase superfamily protein (.1.2) AT2G28590 491 / 2e-173 Protein kinase superfamily protein (.1) AT3G20530 466 / 2e-164 Protein kinase superfamily protein (.1) AT3G24790 460 / 3e-162 Protein kinase superfamily protein (.1) AT3G07070 450 / 1e-157 Protein kinase superfamily protein (.1) AT4G13190 441 / 2e-154 Protein kinase superfamily protein (.1) AT1G20650 440 / 4e-154 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215100 [exp] 583 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 583 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 554 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 552 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 529 / 0 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 526 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 516 / 0 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G234100 [exp] 505 / 3e-179 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 481 / 5e-170 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041426 [exp] 578 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 571 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 562 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 560 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 551 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 550 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 541 / 0 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 539 / 0 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10015756 [exp] 525 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 471 / 1e-165 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G133300.3 pacid=42767472 polypeptide=Potri.006G133300.3.p locus=Potri.006G133300 ID=Potri.006G133300.3.v4.1 annot-version=v4.1 ATGGAATGGATACCATGTTCTGGTATATCAAAACGGGCTACAAAGAACAAGAAAAACAACGACAACAACAACAAGAATAGGGTGATCGTGAACCAGAAAC CACTTGATCAGACCAAAACCTCTCCAGAGATTTTGTCTCCTTGTTCTGACCAAAGTCAAAGAACGTTCGAGAGACTGAGGAATGATTACCCTTTGCGTGT TAAGGGGGAGTCTAAAAATGGAGGGTCTGATAGCACTACAGCACAGACTTTTACATTCCGTGAATTGGCATTTGGAACTAAAAACTTTAGAGCGGAATGT CTTTTAGGTGAGGGAGGTTTTGGAAGAGTGTATAAAGGATATCTGGAAAGCACTAATCAGGTTGTGGCCATCAAGCAACTTAATCGTAATGGTTTGCAAG GGAACAGGGAGTTCCTAGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTTAATCTAATTGGTTATTGCGCTGATGGAGATCAAAGGCT TTTGGTTTATGAATACATGCCTCTAGGATCTTTAGAGGACCACCTACATGAAGTTCCACCTGGTAAGAACTGGCTTGATTGGAACACAAGAATGAAAATA GCTGCTGGGGCAGCGAAAGGATTGGAGCACTTGCATGATAAAGCTAGCCCCCCAGTTATATACCGAGATTTAAAATGTTCCAATATTTTGCTTGATGAAA GTTATCATCCCAAGCTATCAGATTTTGGCTTGGCTAAACTGGGTCCTGTTGGGGATAACACCCATGTATCTACTAGAGTTATGGGCACCTATGGATACTG TGCACCAGAATATGCAATGACTGGGCAACTAACTCTGAAATCAGATGTTTATAGCTTTGGGGTTGTTCTACTGGAAATCATTACAGGGCGGAAGGCAATT GACAATTCAAAAGCTACAGGGGAGCAGAATCTGGTTGCATGGGCAAGACCTTTGTTCAAAGACAGAAAAAAATTCTCAGACATAGCTGATCCAATGCTTC AAGGTCAGTATCCTCCAAGGGGCTTGTACCAAGCTCTTGCTGTTGCAGCAATGTGTGTTCAAGAGCAGCCTAATATGCGCCCCGTCATAGCTGATGTTGT CACAGCTTTGACTTACCTTGCTTCTCAAAAATATGACCCTGATGCAGAGACAGGCCAGAGATCCCGCTACCCCCCTGCCTCGCCTCCTCCTAGAGCAAAG AGGGGTGGTAAAATTCAATGGTAG
AA sequence Show only first row Show all	>Potri.006G133300.3 pacid=42767472 polypeptide=Potri.006G133300.3.p locus=Potri.006G133300 ID=Potri.006G133300.3.v4.1 annot-version=v4.1 MEWIPCSGISKRATKNKKNNDNNNKNRVIVNQKPLDQTKTSPEILSPCSDQSQRTFERLRNDYPLRVKGESKNGGSDSTTAQTFTFRELAFGTKNFRAEC LLGEGGFGRVYKGYLESTNQVVAIKQLNRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHEVPPGKNWLDWNTRMKI AAGAAKGLEHLHDKASPPVIYRDLKCSNILLDESYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAI DNSKATGEQNLVAWARPLFKDRKKFSDIADPMLQGQYPPRGLYQALAVAAMCVQEQPNMRPVIADVVTALTYLASQKYDPDAETGQRSRYPPASPPPRAK RGGKIQW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Potri.006G133300 [exp]	0	1
AT5G01160			RING/U-box superfamily protein...		Potri.006G095600 [exp]	1.41	0.9105
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	3.87	0.9100
AT3G07565			Protein of unknown function (D...		Potri.007G132700 [exp]	4.00	0.9005
AT1G06540			unknown protein		Potri.005G201300 [exp]	4.58	0.9138
AT2G20560			DNAJ heat shock family protein...		Potri.017G016100 [exp]	8.36	0.8913
AT3G57990			unknown protein		Potri.016G046900 [exp]	9.48	0.9001
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	10.95	0.8981	Pt-ATCNGC19.3
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	11.83	0.9044
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007400 [exp]	12.48	0.8778
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	12.72	0.8874

Compare expression of checked genes

Potri.006G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.