Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37290 874 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 743 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 688 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 181 / 6e-50 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 128 / 7e-32 PAM1 plant adhesion molecule 1 (.1) AT3G02460 122 / 7e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 67 / 2e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 59 / 1e-08 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 55 / 2e-07 RabGAP/TBC domain-containing protein (.1.2) AT3G49350 53 / 6e-07 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G215000 [exp] 790 / 0 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.008G046600 [exp] 784 / 0 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.002G218100 [exp] 187 / 6e-52 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.014G163400 [exp] 186 / 7e-52 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.004G106700 [exp] 125 / 7e-31 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.017G109000 [exp] 123 / 2e-30 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.007G134200 [exp] 65 / 1e-10 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.012G024500 [exp] 52 / 1e-06 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 52 / 2e-06 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014020 [exp] 904 / 0 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10041425 [exp] 729 / 0 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10040349 [exp] 723 / 0 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 712 / 0 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10036500 [exp] 572 / 0 AT3G55020 608 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10012363 [exp] 188 / 2e-52 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 187 / 4e-52 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10003047 [exp] 127 / 1e-31 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 126 / 4e-31 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10036501 [exp] 70 / 1e-12 AT3G55020 141 / 2e-37 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.006G133400.4 pacid=42768532 polypeptide=Potri.006G133400.4.p locus=Potri.006G133400 ID=Potri.006G133400.4.v4.1 annot-version=v4.1 ATGATGGAGAAGAGCTTCAATCTCCTCCACATCATCCAACACAGAAGGGACGGCTATGGATTTGCTTTAAGACCTCAACACATACAAAGATATAGAGAGT ACGCAAATATCTATAAGGAGGAGGAAGAGGAAAGGTCATATAAATGGAACAACTTCATTGAACAGCAAGCAAAATCTAATCATTCTAGCTCTTCCGAGGA AGAATGTAGAGAGAAATTGCAGGCTGAGGCTGATGAGTTGAGAGAAGAGACTGTTTTTGAAAGGGGCCGGGAGGAGGAGGATGATTCAAGTGACAAGAAT TCAGATTCTGATGGTTCAACCAAAAGTTATCCTGGGAAAGAGGTCAAACTTTCAGAGGAACCAGAGAAGGAGGTGCAACTTTCAGAGGAACCAGAGAAGG AGGTGCAACGATCAGAGCAACCTGAGAAGGAGGTGCAACTTTCAGAGGAACCAGAGAAGGAGGTGAAACATTCAGAGCAACCTGAGAAGGAGGACCATCT TTCCGAGGAACCAAAGAAGGAGGTACAACTTTCAGAGGAACCTCAGAAGGAGGTGCAAGCTTCACAAATACAAGAAAGGGAGACACTGCTTTCAAAAGAA TCTGACAAGGAGGGGCAGCTTTTAAAAGAAACAAAGGCCAACAAGGTTCAATCGTGGTCTTGGACGAGACCATCTCTTCATGTTATTGAGAATATGATGA GTTCACGTGTTAAGAACATAAAGGATATGAAATACAGGCATAATACCATAAACGGAGACCATCTTCCATCTATAAAAAAGACAGGATCTTCAGGAGGATC CTCTGTGGATGAAATTGACAAGGAATTATGCATTAAAGAGACTTCTGATGACAATGTTGACAAATCCACAGAAGAAACCAACGTGGATAGTAAGGAGTCC CCAGAATCATTCTTTCCTTGGAAAGAGCTCGAGTTCCTCGTCCGTGGGGGAGTTCCAAAGGATCTCAGGGGAGAGGTGTGGCAAGCCTTTGTCGGTGTGA AGACACGTCGAGTGGAGAGATATTATGAGGGGCTGCTTGCTGAAGAAACTAATACAGATGAAAGCAAGGAACACAATAACTCAAATGCTGCACCCAGAAA ATGGAAAAAGCAGATTGAGAAGGACATACCACGAACTTTCCCAGGTCATCCTGCCTTGGATGAGCGTGGTAGGGATTCCTTGAGGCGTGTACTTGTTGCA TATGCTCGACATAACCCTTCAGTGGGGTATTGTCAGGCAATGAATTTCTTTGCTGGCTTATTGCTCCTTCTGATGCCTGAAGAAAATGCCTTTTGGACTT TGGTGGGCATTCTTGATGACTATTTTGATGGCTACTATACAGAAGAAATGATAGAATCTCAGGTGGACCAACTTGTTTTTGAGGAGTTGATACGTGAAAA ATTCCCTAAATTGGTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATCTCTGGACCCTGGTTCCTCTCCATTTTCATCAATATGCTTCCCTGG GAAAGTGTTCTCCGAGTTTGGGATGTTCTTCTTTTTGAAGGAAATCGTGTAATGCTGTTTCAAACAGCTCTTGCTTTAATGGAGTTATATGGTCCAGCAT TAGTTACAACTAAAGATGCTGGGGACGCGATCACTTTATTGCAATCACTTGCAGGGTCAACATTTGATAGCAGCCAGCTTGTTTTGACTGCTTGCATAGG TTATTTGGCAGTAACCGAAGCTAGATTACTACAGTTGAGAGAAAAGCATAGACCAGCTGTGCTTGTAGTAGTTGAGGAAAGATCAAAAGGGGGAAGAGTT TGGAAGGGTTCAAAAGGGCTTGCATCTAAGTTGTACAGTTTTAAGCATGATCCTGGATCACTAGTAGAAGAAAAAAATGTAAGCAAGGGAAACAAGTCCT TATTGGAGTCTCACTCCTCTAATCTGGATGATTTGCTCAGTGGCTTAAGTGTTGACCCAGAAGTAGATTCTTTACCAGATCTTCAAGAACAGGTGGTTTG GCTAAAGGTTGAGTTGTGCAGATTGATGGAGGAGAAAAGATCTGCCATACTCAGAGCCGAGGAGCTTGAGACAGCTCTAATGGAGATGGTCCAACAAGAT AATCGACGGCAATTGAGTGCAAAGGTTGAGCAGTTGGAGCAAGAGGTAGCTGATCTAAGGCAAGCCCTTGCCAATAAGAAAGAACAAGAAGCCGCAATGC TTAAGGTCCTGATGCGGGTAGAGCAAGAACAGAAGATAACTGAAGAAGCTCGAATAGGGGCTGAGCAAGATGCAGCTGCACAAAGATATGCAGTAAATGT GTTTCAGGAAAAATATGAGAAGGCTATGGCTTCACTTGCTCAGATGGAACAGAGAGTGGTCATGGCTGAATCAGTGTTAGAGGCTACCATACAGTACCAG TCTGGCAAAGCTAAGGCACAATCTTCACCAAGGTCAGTGAGCTCCTCTGTGGAAAGTCCCAGAAGAAGGATAGGCCTATTTGGCCTCGGCTGGCGTGACC GGAACAAGGACAAAGACAAACCGACTAATGATGATTCTGGCACCAGTTAA
AA sequence Show only first row Show all	>Potri.006G133400.4 pacid=42768532 polypeptide=Potri.006G133400.4.p locus=Potri.006G133400 ID=Potri.006G133400.4.v4.1 annot-version=v4.1 MMEKSFNLLHIIQHRRDGYGFALRPQHIQRYREYANIYKEEEEERSYKWNNFIEQQAKSNHSSSSEEECREKLQAEADELREETVFERGREEEDDSSDKN SDSDGSTKSYPGKEVKLSEEPEKEVQLSEEPEKEVQRSEQPEKEVQLSEEPEKEVKHSEQPEKEDHLSEEPKKEVQLSEEPQKEVQASQIQERETLLSKE SDKEGQLLKETKANKVQSWSWTRPSLHVIENMMSSRVKNIKDMKYRHNTINGDHLPSIKKTGSSGGSSVDEIDKELCIKETSDDNVDKSTEETNVDSKES PESFFPWKELEFLVRGGVPKDLRGEVWQAFVGVKTRRVERYYEGLLAEETNTDESKEHNNSNAAPRKWKKQIEKDIPRTFPGHPALDERGRDSLRRVLVA YARHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGILDDYFDGYYTEEMIESQVDQLVFEELIREKFPKLVNHLDYLGVQVAWISGPWFLSIFINMLPW ESVLRVWDVLLFEGNRVMLFQTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACIGYLAVTEARLLQLREKHRPAVLVVVEERSKGGRV WKGSKGLASKLYSFKHDPGSLVEEKNVSKGNKSLLESHSSNLDDLLSGLSVDPEVDSLPDLQEQVVWLKVELCRLMEEKRSAILRAEELETALMEMVQQD NRRQLSAKVEQLEQEVADLRQALANKKEQEAAMLKVLMRVEQEQKITEEARIGAEQDAAAQRYAVNVFQEKYEKAMASLAQMEQRVVMAESVLEATIQYQ SGKAKAQSSPRSVSSSVESPRRRIGLFGLGWRDRNKDKDKPTNDDSGTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G133400 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Potri.013G021300 [exp]	6.78	0.7428
AT3G61700			Plant protein 1589 of unknown ...		Potri.015G019500 [exp]	9.16	0.6762
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.003G212300 [exp]	11.22	0.7103
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	12.64	0.7096
AT2G39580			unknown protein		Potri.010G208200 [exp]	18.00	0.7307
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	20.71	0.7073	Pt-BZO2.3
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	23.55	0.7166
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	24.16	0.7124
AT1G77250			RING/FYVE/PHD-type zinc finger...		Potri.005G183700 [exp]	46.17	0.6708
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	47.74	0.6791

Compare expression of checked genes

Potri.006G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.