Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02790 326 / 7e-114 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 314 / 2e-109 GSTL1 glutathione transferase lambda 1 (.1.2) AT3G55040 285 / 6e-97 GSTL2 glutathione transferase lambda 2 (.1) AT2G29460 60 / 8e-11 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT5G16710 60 / 1e-10 DHAR3 dehydroascorbate reductase 1 (.1) AT1G69920 57 / 2e-09 ATGSTU12 ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 12, glutathione S-transferase TAU 12 (.1) AT1G75270 56 / 2e-09 DHAR2 dehydroascorbate reductase 2 (.1) AT1G78380 55 / 5e-09 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G10370 55 / 6e-09 GST30B, ATGSTU17, ERD9 GLUTATHIONE S-TRANSFERASE U17, GLUTATHIONE S-TRANSFERASE 30B, GLUTATHIONE S-TRANSFERASE 30, EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE TAU 17, Glutathione S-transferase family protein (.1) AT3G09270 55 / 8e-09 ATGSTU8 glutathione S-transferase TAU 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083500 [exp] 438 / 4e-158 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.008G046800 [exp] 329 / 3e-114 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.010G214800 [exp] 112 / 5e-31 AT5G02780 98 / 6e-26 glutathione transferase lambda 1 (.1.2) Potri.001G436500 [exp] 65 / 2e-12 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140400 [exp] 64 / 5e-12 AT1G78380 308 / 9e-108 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.008G175100 [exp] 64 / 5e-12 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.013G072400 [exp] 61 / 3e-11 AT3G09270 161 / 2e-49 glutathione S-transferase TAU 8 (.1) Potri.001G437200 [exp] 61 / 5e-11 AT1G78380 308 / 2e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436600 [exp] 61 / 5e-11 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015049 [exp] 366 / 1e-129 AT5G02790 322 / 3e-112 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10003994 [exp] 355 / 4e-125 AT5G02790 324 / 5e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Lus10040347 [exp] 286 / 5e-97 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10019895 [exp] 282 / 7e-92 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10042470 [exp] 66 / 8e-13 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 66 / 5e-12 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10026198 [exp] 64 / 7e-12 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042468 [exp] 63 / 7e-12 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 63 / 9e-12 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10021103 [exp] 63 / 1e-11 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF13410 [poplar] [flax] GST_C_2 Glutathione S-transferase, C-terminal domain CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G133500.2 pacid=42768808 polypeptide=Potri.006G133500.2.p locus=Potri.006G133500 ID=Potri.006G133500.2.v4.1 annot-version=v4.1 ATGGCGACTGCTTCTGCTTTGGATAAGAGCGTACCAGAGAAATTGGCCCCACCATTGGATGCTACTGCAGAGCAACCTCCACTCTTTGATGGAACTACCA AATTGTATACATGCTACACGTGTCCATTTGCCCAGCGAGTTTGGATCACCAGGAATTTCAAGGGATTACAAGATGAGATTAAGCTAGTTCCTCTAATCCT TCAAAACAGGCCTGCTTGGTATCCAGAGAAAGTTTACCCTCCAAATAAGGTACCATCATTGGAACACAATGGCAAAATTACCGGGGAAAGTCTTGATTTG ATTAAATATTTAGAGAGCAACTTTGAAGGACCTTCTCTTCTCCCCAAGGATCCTGCTAAGAAAGAGTTTGCTGAAGAGTTGTTCTCCTACACTGATAAAT TCAACGGCACAGTGTATACTGCATTCAAGGGAGACCTGGCGAAGGAAGCTGGTCCTGCTTTTGATTACTTAGAAAATGCTCTGCATAAATTTGATGATGG GCCATTCTTTCTTGGTAAAGAATTCAGTTTGGTGGACATAGCCTATATCCCATTTGTTGAAAGACTCAATATCTTCTTGCTAGAAGTTTTTAAGTATGAT ATTGCTGCCGGCAGACAAAAACTGGCAGCTTGGATTGAGGAGGTGAACAAAATTGAGGCTTACAAGCAGACAAAAACTGATCCGAAAGAGCTGGTTGAAT TTTACAAGAAGCGCTTTTTGGCTTAG
AA sequence Show only first row Show all	>Potri.006G133500.2 pacid=42768808 polypeptide=Potri.006G133500.2.p locus=Potri.006G133500 ID=Potri.006G133500.2.v4.1 annot-version=v4.1 MATASALDKSVPEKLAPPLDATAEQPPLFDGTTKLYTCYTCPFAQRVWITRNFKGLQDEIKLVPLILQNRPAWYPEKVYPPNKVPSLEHNGKITGESLDL IKYLESNFEGPSLLPKDPAKKEFAEELFSYTDKFNGTVYTAFKGDLAKEAGPAFDYLENALHKFDDGPFFLGKEFSLVDIAYIPFVERLNIFLLEVFKYD IAAGRQKLAAWIEEVNKIEAYKQTKTDPKELVEFYKKRFLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Potri.006G133500 [exp]	0	1
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	3.16	0.8339
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Potri.018G001600 [exp]	5.47	0.7894
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Potri.004G014100 [exp]	5.91	0.8159
AT5G64160			unknown protein		Potri.003G023601 [exp]	7.21	0.7673
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	10.39	0.7828
AT1G48420		DCD, ATACD1, AC...	A. THALIANA 1-AMINOCYCLOPROPAN...		Potri.012G038900 [exp]	16.52	0.8218
					Potri.013G037900 [exp]	22.44	0.7799
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.004G179628 [exp]	22.97	0.8139
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	28.24	0.7612
AT1G45230			Protein of unknown function (D...		Potri.002G125700 [exp]	34.19	0.8125

Compare expression of checked genes

Potri.006G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.