Plant FIBer expression Database

Potri.006G133900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12130 472 / 4e-167 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019895
[exp]
453 / 2e-156 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
Lus10014022
[exp]
449 / 8e-156 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
Lus10023589
[exp]
0 / 1 ND 51 / 1e-10
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0292 LysE PF03741 TerC Integral membrane protein TerC family
Representative CDS sequence
>Potri.006G133900.1 pacid=42767280 polypeptide=Potri.006G133900.1.p locus=Potri.006G133900 ID=Potri.006G133900.1.v4.1 annot-version=v4.1
ATGAGATTAACTTCAGTAATCCACAATAATAGCATCATTCCACTCTCCCTCAAGGTTTCGCCAGCTAATTACACTTATAGTGTCCAATTCTCTCATCCTC
ATTTCCCTTCTTTCAATTCAGTTATTAGCAAACGCCGTGGCCAGAATTCTCCAATTTCATGTGCAAGAGGCACTGAACAGGAGGATGATCTATCCCCTTC
AGAAGCTGTGAAGACGAGTTCTCAGACACGCGATGATGTTAGCAAATTTATTACCTCTACTGCTCCCCCTTCTGTGGATAAAGCAGAGGAGAAAGTTAAA
GGAAATTATAAGACATCGATTAAAACTGTTGCTTTATGTGTGTGCACTGCTGTGGCATTTGGCTTTGGTATTGGTTTGAAAGATGGTGTTGGCAAGGCGT
CTGAGTTTTTTGCCGGGTATATTTTGGAGCAAAGCTTGTCGGTGGACAATCTATTTGTCTTTGTTCTGATTTTCAAGTATTTTAAAGTGCCACTTATGTA
TCAGAATCGGGTGCTTTCATATGGAATTGCTGGCGCAATCATCTTCCGTTTGTCATTGATACTTCTTGGAACAGCTACTCTCCAGAGGTTTGAGGCAGTC
AACCTATTCCTGGCTACAATACTCCTTTACTCATCTTTCAAGCTATTTGCCACTGAAGAGGATGACAGCGACCTATCAGACAACTTTATAGTGAAGACGT
GCCAGAGATTTATCCCTGTCACTTCTAATTATGATGGGAACAAATTCATAACACGTGAGGATGGTTTGTGGAAAGCTACACCCTTACTTCTGACAGTAGC
AGTTATTGAGCTCAGTGATATAGCATTTGCTGTTGACTCCATACCAGCTGTTTTTGGTGTTACACGGGATCCTTTCATAGTTTTTTCTTCTAATCTCTTT
GCCATTTTAGGTCTGAGGTCTCTTTACACACTAATTTCTGAGGGTATGGCAGATTTGGAGTATTTACAGCCATCGATAGCTATTGTTCTAGGTTTCATTG
GATGCAAAATGATTCTGGATTTTATGGGTTTTCACATATCAACCGAGGCGTCCCTTGGATTTGTGGCAACAAGTCTTGGTGCAGGCGTCCTATTGAGTCT
AATGAAGAAGTCTGACTAG
AA sequence
>Potri.006G133900.1 pacid=42767280 polypeptide=Potri.006G133900.1.p locus=Potri.006G133900 ID=Potri.006G133900.1.v4.1 annot-version=v4.1
MRLTSVIHNNSIIPLSLKVSPANYTYSVQFSHPHFPSFNSVISKRRGQNSPISCARGTEQEDDLSPSEAVKTSSQTRDDVSKFITSTAPPSVDKAEEKVK
GNYKTSIKTVALCVCTAVAFGFGIGLKDGVGKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPLMYQNRVLSYGIAGAIIFRLSLILLGTATLQRFEAV
NLFLATILLYSSFKLFATEEDDSDLSDNFIVKTCQRFIPVTSNYDGNKFITREDGLWKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF
AILGLRSLYTLISEGMADLEYLQPSIAIVLGFIGCKMILDFMGFHISTEASLGFVATSLGAGVLLSLMKKSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12130 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURI... Potri.006G133900
[exp]
0 1
AT1G78915 Tetratricopeptide repeat (TPR)... Potri.008G003800
[exp]
2.44 0.9675
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Potri.002G000200
[exp]
4.24 0.9602
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Potri.001G044000
[exp]
4.35 0.9678
AT1G71810 Protein kinase superfamily pro... Potri.002G061000
[exp]
5.29 0.9474
AT1G75730 unknown protein Potri.005G238800
[exp]
7.34 0.9547
AT1G64380 AP2_ERF Integrase-type DNA-binding sup... Potri.001G092400
[exp]
8.71 0.9329
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Potri.010G176400
[exp]
11.22 0.9517
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
11.48 0.9567
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Potri.011G140100
[exp]
11.83 0.9561
AT1G16880 ACR11 ACT domain repeats 11, uridyly... Potri.008G010400
[exp]
13.85 0.9537

Potri.006G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.