Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02770 114 / 1e-31 MOS11 modifier of snc1, 11, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082900 [exp] 221 / 2e-73 AT5G02770 119 / 2e-33 modifier of snc1, 11, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014023 [exp] 122 / 6e-35 AT5G02770 134 / 3e-39 modifier of snc1, 11, unknown protein Lus10019894 [exp] 121 / 3e-34 AT5G02770 142 / 2e-42 modifier of snc1, 11, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G134000.6 pacid=42768427 polypeptide=Potri.006G134000.6.p locus=Potri.006G134000 ID=Potri.006G134000.6.v4.1 annot-version=v4.1 ATGGCAACTGAAACAGAAAATCCTTCAACAGCCGCGGCCGCTGCCATCACCGTTGAAGATAACCCTAGCAAAACCCTAGACACGGCAGTCCCTGCTTCTA CCAAGCCAGATCGAGTCGAAGATTCTACCAACACTGCATCATCTACCGTTGACTCAGCTACAGAAGGGCCTATGCAGGGCGCCGATAATTCAAAGAGCGC TGCCCCGGCCACCGACACTGACAAGAAGATCCGCCGTGCTGAGCGGTTTGGAATTACTGTTCAGCTTTCCGAGAAAGAGAAGCGCAATTCTCGTGCTGAA AGGTTTGGCACTGGATCGCAGGGGCCAGAGTCAGAGTCAGACTCAGTGAAGAAATCAGAGGAGCTGAAGAGGAAGGCTAGAGCAGAGAGGTTTGGGATTC CTGTGCCACCCACAGCTACTGCTGAGGAGACGAAGAAGAAAGCTCGTCATGAAAGATTGGCACCGGCTCCAAAAATAGATGCACTTGAAGAAAACAAAAG GAAGGCAAGGGCTCTCAGGTTTTCACAAAGTTCATCTGATTCCCTATCAATGAATGGCAAGGGGGATCTTGAGCCAAAGGCAGCTATTGCAGGCAAGGCT GGTGGAGGGTCTTGA
AA sequence Show only first row Show all	>Potri.006G134000.6 pacid=42768427 polypeptide=Potri.006G134000.6.p locus=Potri.006G134000 ID=Potri.006G134000.6.v4.1 annot-version=v4.1 MATETENPSTAAAAAITVEDNPSKTLDTAVPASTKPDRVEDSTNTASSTVDSATEGPMQGADNSKSAAPATDTDKKIRRAERFGITVQLSEKEKRNSRAE RFGTGSQGPESESDSVKKSEELKRKARAERFGIPVPPTATAEETKKKARHERLAPAPKIDALEENKRKARALRFSQSSSDSLSMNGKGDLEPKAAIAGKA GGGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.006G134000 [exp]	0	1
AT3G61800			unknown protein		Potri.014G099300 [exp]	3.74	0.8337
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.001G268200 [exp]	4.47	0.7705
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	7.34	0.8157
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.013G123100 [exp]	7.87	0.8209
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Potri.012G136100 [exp]	8.30	0.8187
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Potri.006G066800 [exp]	13.19	0.7260
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	13.26	0.7966
AT3G09850			D111/G-patch domain-containing...		Potri.018G113600 [exp]	14.07	0.8030
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.010G013700 [exp]	17.49	0.7769
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	17.77	0.8174	APK2.1

Compare expression of checked genes

Potri.006G134000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.