Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33150 1521 / 0 LKR/SDH, SDH lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134450 [exp] 469 / 8e-159 AT4G33150 385 / 4e-127 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038086 [exp] 1500 / 0 AT4G33150 1445 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3) Lus10009808 [exp] 597 / 0 AT4G33150 577 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03435 [poplar] [flax] Sacchrp_dh_NADP Saccharopine dehydrogenase NADP binding domain CL0063 [poplar] [flax] PF04455 [poplar] [flax] Saccharop_dh_N LOR/SDH bifunctional enzyme conserved region CL0325 [poplar] [flax] Form_Glyc_dh PF05222 [poplar] [flax] AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF16653 [poplar] [flax] Sacchrp_dh_C Saccharopine dehydrogenase C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G134300.3 pacid=42768797 polypeptide=Potri.006G134300.3.p locus=Potri.006G134300 ID=Potri.006G134300.3.v4.1 annot-version=v4.1 ATGCTTGGTAATGGAGTTGTTGGAATCCTCTCGGAGTCAGTGAACAAGTGGGAAAGAAGGACGCCTTTAACCCCCTCTCATTGTGCTCGACTTTTGCATA GTGGGAAGGATAAAACTGGGGTGGCTCGGATAATTGTGCAGCCGTCGACGAAGCGTATTCATCATGATGCGATGTATGAGGATGTTGGCTGTGAGATATC GGATGATTTGTCCGAATGTGGTCTCATCGTGGGAATTAAGCAGCCCAAGCTGGATATGATTCTTCATGATAGAGCTTATGCCTTCTTCTCTCATACTCAC AAGGCTCAGAAAGAAAACATGCCTTTGTTGGATAAGGTACTAGCTCAGAGGGTGTCATTGTATGACTATGAACTCATTGTTGGGGACCATGGTAAAAGGT TACTTGCATTTGGGAAATTTGCTGGCAGAGCCGGGTTCATTGATTTCTTGGGTGGATTAGGAAAGCGTTATCTAAGTCTTGGATATTCAACACCGTTCCT CTCATTGGGTGAAGCTTACATGTATTCATCCTTGGCTGCTGCCACAGCTGCTGTTATTTCTGTCGGAGAAGAGATCGCTACTTTTGGATTGCCATCAGGA ATCTGTCCTTTGGTATTCATATTCACCGGATCTGGAAATGGAAATGTTTCTCATGGCGCACAAGAGATATTTAAGCTTCTTCCACACACTTTTGTTGATC CAAGCAGACTTCCAGAGCTATTTGCACAAGGCAGGGATGTCATTCCACCTGAAAAGGCTTCGAAGAGAGTTTTCCAAGTATATGGTTGTGTTGTCACTTG TCAAGACATGGTTGAACACCTAGATTCTTCAAAAACATTTGATAAAACAGACTATTATGCACATCCAGAGCACTACAAGCCCATTTTCCATGAAAAAATA GCCCCATATGCATCTGTTATTGTCAATTGCATGTACTGGGAAAAAAGATTTCCTCGGTTGTTGAGTACCCAGCAGCTTCAAGATCTAACGAGGAGAGGAT GTCCGCTTATTGGAATTGCTGACATAACTTGTGATATTGAGGGCTCATTAGAGTTCATTAACCAAACCACATCAATTGACTCACCATTCGTGAGATATGA TCCATTAAATGATTCGTATCACCATGGCATGGAGGGTGATGGTGTGATATTTTCATCCATTGACATTCTTCCTACACAGTTTGCAAAAGAGGCTTCCCAA CATTTCGGAGACATACTATCCCAATTTATTGGCAGTTTGGCTTCAACAACTGACATTACTAAGCTACCTTCACATCTAAGGAATGCTTGCATAGCCCATG GAGGAGCACTTGCCCCCTTGTTTGAATACATTCCACGCATGCGAAAGTCTGATTCAGAAGATATAGCAGAAAGTCATACAAATTTAAAGTCTAGCAAGTA TAAGTTCAGTATTTTGGTATCTCTGAGTGGACACTTATTTGATCAATTCCTAATAAATGAGGCATTAGATATCATCGAAGCTGCTGGTGGCTCCTTCCAC CTGGTTAAGTGTCAAGTGGGTCAAAGTGCTACTGCTATGTCATACTCTGATCTCGAAGTTGGTGCACATGATAGGGCAGTTCTGAATCAAATTATTGATT CTTTAACTTCTCTTGCCAATCCAGATGAAAGTAATGGAACTTTAAATAAAGAAGGAAATAGAATTTCCTTGAAGGTTGGTAAAGTCCAGCAGAATGACAT GAATAAGGGAAATGATACAAAAAGGAAGGCCGCTGTTCTAATTATTGGTGCAGGCCGCGTCTGTCGACCAGCTGTTGAGCTTTTAACATCAAATGAAAAC ACTTCATCTCGTGAATGGTACAAGGCATGTCTGAATACTGATTTTGAAGGGCAGAATGTAGTCGAAGTTGTCGTTGCTTCTCTTTATCTTAAGGATGCAG AAGAGATTATAGATGGAATTCCTAATGCATCGGCAGTTCAGCTTGATGTGAAGGATGATGAAAGTCTTTGCAAGTATATTTCACAGGTTGAGGTTGTTGT CAGCTTACTTCCCCCTAGTTGCCACGTAATCATAGCTAATGCATGCATCAAGCTTAAAAAGCATCTTGTCACAGCAAGCTACGTTGATGATTCTATGTCA TTTCTACATGAAGAGGCAAAAGCTGCTGATATTACTATTCTTGGCGAGATGGGTTTGGATCCAGGAATTGATCATATGATGGCAATGAAGATGATCAACA ATGTACGTGTTCGGAAAGGGAGAATAAAATCCTTCACTTCTTATTGTGGAGGACTCCCATCCCCAGCAGCTGCAAATAACCCATTAGCATATAAATTCAG CTGGAGCCCTGCAGGAGCCATCCGATCTGGGCGCAATCCGGCCACATATAAAAATCATGGTGAAATTGTGCATGTTGATGGTGAGAAACTTTATGATTCA GCATTCAGATATCGGATACCGAATTTTCCAGCTTTTGCATTAGAATGTCTTCCAAATCGCAATTCTTTAGTTTATGGAAAACTGTATGGCATAGAAGATG AAGCATCCACCATCTTTCGTGGAACGCTCCGCTATGAAGGGTTTGGCGAAATAATGGGGACACTTGCAAGTATTGGTCTATTTAATACTGAATCTCATCT AGTTTTAAGACATGGACAGAGACCCTCATTCAAAAGATTCCTTTGTGAACTGCTAAACATTGTTAGTGAAATTCCGGATGGAGTTCCGCTAGGAGAGAAG CACATTAGTGAGAGAATTGTTGCACTTGGGCATTGCAAAGAGCAAGGAACAGCAGTAAGGACGGCCAGAACCATTATATATTTAGGACTTCATGAGCAGA CAGAAATTCCTGTCTCCTGCCAAAGTGCATTTGATGTTACCTGTTACCGCATGGAAGAAAGGTTGGCCTATTCCAGCACAGAACAGGATATGGTGCTTTT GCATCATGAAATGGAGGTAGAATTCCCTGACAGCCAAGCTACAGAGAACCATAAGGGCACACTACTAGAATTTGGAAGGACCGGGAATGGGAAAACAACC ACTGCCATGGCTCTCACTGTTGGTATTCCAGTGGCCATTGGAGCTCTGCTCTTGCTAGAGAACAAGATCAATACAAGAGGTGTCTTGAGACCTTTTGAAC CTGAAGTATATGTACCAGCACTGGACATCTTACAAGCGTATGGCATCAAGGTGATGGAGAAGGTTGAGTGA
AA sequence Show only first row Show all	>Potri.006G134300.3 pacid=42768797 polypeptide=Potri.006G134300.3.p locus=Potri.006G134300 ID=Potri.006G134300.3.v4.1 annot-version=v4.1 MLGNGVVGILSESVNKWERRTPLTPSHCARLLHSGKDKTGVARIIVQPSTKRIHHDAMYEDVGCEISDDLSECGLIVGIKQPKLDMILHDRAYAFFSHTH KAQKENMPLLDKVLAQRVSLYDYELIVGDHGKRLLAFGKFAGRAGFIDFLGGLGKRYLSLGYSTPFLSLGEAYMYSSLAAATAAVISVGEEIATFGLPSG ICPLVFIFTGSGNGNVSHGAQEIFKLLPHTFVDPSRLPELFAQGRDVIPPEKASKRVFQVYGCVVTCQDMVEHLDSSKTFDKTDYYAHPEHYKPIFHEKI APYASVIVNCMYWEKRFPRLLSTQQLQDLTRRGCPLIGIADITCDIEGSLEFINQTTSIDSPFVRYDPLNDSYHHGMEGDGVIFSSIDILPTQFAKEASQ HFGDILSQFIGSLASTTDITKLPSHLRNACIAHGGALAPLFEYIPRMRKSDSEDIAESHTNLKSSKYKFSILVSLSGHLFDQFLINEALDIIEAAGGSFH LVKCQVGQSATAMSYSDLEVGAHDRAVLNQIIDSLTSLANPDESNGTLNKEGNRISLKVGKVQQNDMNKGNDTKRKAAVLIIGAGRVCRPAVELLTSNEN TSSREWYKACLNTDFEGQNVVEVVVASLYLKDAEEIIDGIPNASAVQLDVKDDESLCKYISQVEVVVSLLPPSCHVIIANACIKLKKHLVTASYVDDSMS FLHEEAKAADITILGEMGLDPGIDHMMAMKMINNVRVRKGRIKSFTSYCGGLPSPAAANNPLAYKFSWSPAGAIRSGRNPATYKNHGEIVHVDGEKLYDS AFRYRIPNFPAFALECLPNRNSLVYGKLYGIEDEASTIFRGTLRYEGFGEIMGTLASIGLFNTESHLVLRHGQRPSFKRFLCELLNIVSEIPDGVPLGEK HISERIVALGHCKEQGTAVRTARTIIYLGLHEQTEIPVSCQSAFDVTCYRMEERLAYSSTEQDMVLLHHEMEVEFPDSQATENHKGTLLEFGRTGNGKTT TAMALTVGIPVAIGALLLLENKINTRGVLRPFEPEVYVPALDILQAYGIKVMEKVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	1.41	0.8876
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	2.44	0.8851
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	2.82	0.8783	Pt-IBR5.1
AT5G03650		SBE2.2	starch branching enzyme 2.2 (....		Potri.005G251000 [exp]	4.12	0.8213
					Potri.003G139000 [exp]	4.24	0.8739
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	5.00	0.8765	TGA3.1
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	6.92	0.8380
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	7.00	0.8613
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	8.48	0.8501
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	9.94	0.8411	PtrcGrx_C1.1

Compare expression of checked genes

Potri.006G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.