Plant FIBer expression Database

Potri.006G134400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65490 765 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002654
[exp]
811 / 0 AT5G65490 715 / 0.0 unknown protein
Lus10012731
[exp]
791 / 0 AT5G65490 698 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07093 SGT1 SGT1 protein
Representative CDS sequence
>Potri.006G134400.1 pacid=42767607 polypeptide=Potri.006G134400.1.p locus=Potri.006G134400 ID=Potri.006G134400.1.v4.1 annot-version=v4.1
ATGATCAAAATGGCTGACCAGTCGCAAGCACACTCCCGAGTCCCAGACGACACTGTTTACTACGCTATCTTCCCGGACTCCTCTTCCCTCTCTAATCCCT
CCGCTTCCTCTCAATCCCTCCACCTCTACCTCCAAATCCTTGACTTCATTTCTCCTTACACCTCCTCTTACATCTGGCAACACGAACCCTTCTCTCTTTC
CCTCTCCTCCTCCTCTTCTCCCCCTCTCCCTCACCTCCACGGCAAGCTCCGCTTTGGCGACAACATTGAAGATGAGTGGTTCACTGTTTTCCTTCTCTTC
CAAATCTCTCACCACTTCCCTTCTCTCTCCATTCGAGTCTGGGACAACGACGGTGAATTTCTCCTCATTGAAGCTGCCTTTCATCTCCCTCGTTGGATTA
ACCCCGAAACCAGTGATAACCGTGTGTTTATTCGCCGCGGTGACATCCATATTGTCCCGAAAAGCCGGTTACCCAACCCGAAGTTGATCGATTCCTTGAA
GTTCTTGATAGACTGCGAGGGTGAGTCACGTGCGGCGGAGTCTGTTCAGATTGCGGTGAAGGGTCGGATTTCTGATTATCCAGAAAGAGCGAGGCGAAAT
ATGCATCAAGCTAGGGTTAGGGTTCCGGTATCGGTGGCACAGGTCTTAAAGCAGGAGCCGTGCTTGATTTCTTTGGCGGTGGAGGGGTTTTATGATAGGG
ATATTGATACAATGAAGTATGCGGCAAAAATGGAGAAATTTCTTAGTAAAGGGAAAGAGGAGGAGTTGGTTTGTGTGGTGATAAAAATGTCTAGAGCTAT
GTATGCTCAGTTAATGCAGCAGAAGTTTCAGGCACCCAAGTGCTATCGTATGCCAAATCGAGGAGATGACCTGGGTGCGTATCTGGAGGCGGAGTTAGGT
ATGAAGATTGCTTGTGGGTTCGAGATGATGTATCAACAGAGGAGGAGGGAAGGAGAGGAGGGTAAAGGGAGCACGTGGTTGAAGTACAAGGAGAGTTTGG
AGAGGAGTGGGTATTTTGAAGGATTTTTGCCAGGTTCGAAGGATTACAAGAGGTTGATGGAGAATGCTGAGGGGTATTACCGAAATAGTACCTTGTTTTC
GAGGACCAGTCAAATGATGAGTGCTCCAGTGAAACGGATTGATGAGATTCTTGCTTTACCACACTCAGCTGATGATTTTAGTTGCCAGGAGGTTCCACCT
TCTGATGATGATTCTTGGCTGTATAGTGGAGAAGATGAGTTGAATGCTGCTCTACAACAGAGACAAAACGAGATGGATCTCTACAACGCCAAACATAAAA
AGAAACAGATGCCAAAAGAGTCACAAGATGCTGGTCCTTCATCCAGTAGTAATTTTGATGATTTTGATCTTGGTGAAATGGCAAAAGCTATGCAAGCATT
CGTGGATAAAGCATCAAGTTACAAGGGAGCAGAGGTTCCAGAAAACAGGAATATGAAAGAGGTGGACCTTGATGTGGAGTGTTTTCTAAATGACATGGAA
TCAGTAATGAAGCGCTATGGCCCTAAAGACGGTGCTGCCGATGTTGATTCTGAAGAAGCATCCTCATCTGACATGGATTTTGATGAGTCTGAAGATGAGA
GTGATATTATGGAAGCTTCTGAGGATAATGTGGACGGGGAGGACACTTTCATGAACACTTATTCTGATGCTCTGAATGAGGAACTGAAGAACACCACCCT
TAAGAAAAGTTTTGTTCGTACAGATGACCAATTGTCCAAGAAAAACGAGGAGACATCAAATACCATGGAGGGCATGGATGAAGAATTTACTCCCGTGGAT
GTTGATGTTAACCTGGTGAAGAGCCTGCTTGATTCCTATTCATCTCAACAAGGACAACCTGGCCCCACTTCCAATTTGCTGGGGCTCATGGGTCTACAGC
TCCCTCAAGATACCACTAAGGGCAAATGA
AA sequence
>Potri.006G134400.1 pacid=42767607 polypeptide=Potri.006G134400.1.p locus=Potri.006G134400 ID=Potri.006G134400.1.v4.1 annot-version=v4.1
MIKMADQSQAHSRVPDDTVYYAIFPDSSSLSNPSASSQSLHLYLQILDFISPYTSSYIWQHEPFSLSLSSSSSPPLPHLHGKLRFGDNIEDEWFTVFLLF
QISHHFPSLSIRVWDNDGEFLLIEAAFHLPRWINPETSDNRVFIRRGDIHIVPKSRLPNPKLIDSLKFLIDCEGESRAAESVQIAVKGRISDYPERARRN
MHQARVRVPVSVAQVLKQEPCLISLAVEGFYDRDIDTMKYAAKMEKFLSKGKEEELVCVVIKMSRAMYAQLMQQKFQAPKCYRMPNRGDDLGAYLEAELG
MKIACGFEMMYQQRRREGEEGKGSTWLKYKESLERSGYFEGFLPGSKDYKRLMENAEGYYRNSTLFSRTSQMMSAPVKRIDEILALPHSADDFSCQEVPP
SDDDSWLYSGEDELNAALQQRQNEMDLYNAKHKKKQMPKESQDAGPSSSSNFDDFDLGEMAKAMQAFVDKASSYKGAEVPENRNMKEVDLDVECFLNDME
SVMKRYGPKDGAADVDSEEASSSDMDFDESEDESDIMEASEDNVDGEDTFMNTYSDALNEELKNTTLKKSFVRTDDQLSKKNEETSNTMEGMDEEFTPVD
VDVNLVKSLLDSYSSQQGQPGPTSNLLGLMGLQLPQDTTKGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65490 unknown protein Potri.006G134400
[exp]
0 1
AT1G31480 SGR2 shoot gravitropism 2 (SGR2) (.... Potri.019G072300
[exp]
2.64 0.9417 Pt-SGR2.2
AT5G20620 UBQ4 ubiquitin 4 (.1) Potri.006G129600
[exp]
4.35 0.9521 SUBI.10
AT1G45976 SBP1 S-ribonuclease binding protein... Potri.014G027000
[exp]
4.89 0.9417 SBP1.3
AT1G33420 RING/FYVE/PHD zinc finger supe... Potri.013G092000
[exp]
10.95 0.9036
AT1G18260 HRD3A, EBS5 EMS-mutagenized bri1 suppresso... Potri.015G038100
[exp]
11.31 0.9112
AT2G33730 P-loop containing nucleoside t... Potri.012G045800
[exp]
11.35 0.9005
AT1G16740 Ribosomal protein L20 (.1) Potri.004G095475
[exp]
11.61 0.9436
AT2G20560 DNAJ heat shock family protein... Potri.007G136700
[exp]
13.85 0.9171
AT5G12020 HSP17.6II 17.6 kDa class II heat shock p... Potri.006G223900
[exp]
15.09 0.9420 HSP17.11
AT5G05410 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT... Potri.010G183700
[exp]
15.29 0.9369 Pt-DREB2.2

Potri.006G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.