Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33150 382 / 2e-125 LKR/SDH, SDH lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G134300 [exp] 466 / 3e-158 AT4G33150 1521 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009808 [exp] 363 / 2e-121 AT4G33150 577 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3) Lus10038086 [exp] 359 / 4e-117 AT4G33150 1445 / 0.0 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF05222 [poplar] [flax] AlaDh_PNT_N Alanine dehydrogenase/PNT, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G134450.1 pacid=42769080 polypeptide=Potri.006G134450.1.p locus=Potri.006G134450 ID=Potri.006G134450.1.v4.1 annot-version=v4.1 ATGATTGCTTTATTCAGGAAGAACAGGGAAGAAGGTACGTACACCATGCTTGGTAATGGAGTTGTTGGAATCCTCTCGGAGTCAGTGAACAAGTGGGAAA GAAGGACGCCTTTAACCCCCTCTCATTGTGCTCGACTTTTGCATGGTGGGAAGGATAAAACTGGGGTGGCTCGGATAATTGTGCAGCCGTCGACGAAGCG TATTCATCATGATGCGATGTATGAGGATGTTGGCTGTGAGATATCGGATGATTTGTCCGAATGTGGTCTCATCGTGGGAATTAAGCAGCCCAAGGTACTA GCTCAGAGGGTGTCATTGTATGACTATGAACTCATTGTTGGGGACCATGGTAAAAGGTTACTTGCATTTGGGAAATTTGCTGGCAGAGCCGGGTTCATTG ATTTCTTGGGTGGATTAGGAAAGCGTTATCTAAGTCTTGGATATTCAACACCGTTCCTCTCATTGGGTGAAGCTTACATGTATTCATCCTTGGCTGCTGC CAAAGCTGCTGTTATTTCTGTCGGAGAAGAGATCGCTACTTTTGGATTGCCATCAGGAATCTGTCCTTTGGTATTCATATTCACCGGATCTGGAAATGGA AATGTTTCTCATGGCGCACAAGAGATATTTAAGCTTCTTCCACACACTTTTGTTGATCCAAGCAGACTTCCAGAGCTATTTGCACAAGGCAGGGATGTCA TTCCACCTGAAAAGGCTTCAAAGAGAGTTTTCCAAGTATATGGTTGTGTTGTCTCACTTGTCAAGACATGGTTGAACAGCTAG
AA sequence Show only first row Show all	>Potri.006G134450.1 pacid=42769080 polypeptide=Potri.006G134450.1.p locus=Potri.006G134450 ID=Potri.006G134450.1.v4.1 annot-version=v4.1 MIALFRKNREEGTYTMLGNGVVGILSESVNKWERRTPLTPSHCARLLHGGKDKTGVARIIVQPSTKRIHHDAMYEDVGCEISDDLSECGLIVGIKQPKVL AQRVSLYDYELIVGDHGKRLLAFGKFAGRAGFIDFLGGLGKRYLSLGYSTPFLSLGEAYMYSSLAAAKAAVISVGEEIATFGLPSGICPLVFIFTGSGNG NVSHGAQEIFKLLPHTFVDPSRLPELFAQGRDVIPPEKASKRVFQVYGCVVSLVKTWLNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	0	1
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	1.00	0.9199
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.017G102500 [exp]	3.46	0.8964
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.005G236700 [exp]	3.87	0.8598
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	4.89	0.8829
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.018G109500 [exp]	7.21	0.8126
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411700 [exp]	7.48	0.8670
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	8.48	0.8371
AT5G05140			Transcription elongation facto...		Potri.006G035500 [exp]	8.94	0.8249
AT1G05280			Protein of unknown function (D...		Potri.017G039600 [exp]	9.48	0.8331
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.019G081500 [exp]	9.53	0.8275	MYB6.2,MYB168

Compare expression of checked genes

Potri.006G134450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.