Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33220 677 / 0 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G43270 668 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 442 / 2e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 426 / 5e-144 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 414 / 4e-139 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 412 / 6e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 399 / 3e-133 ATPME2 pectin methylesterase 2 (.1) AT3G14310 395 / 8e-132 ATPME3 pectin methylesterase 3 (.1) AT3G05610 388 / 9e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 380 / 5e-127 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022700 [exp] 479 / 2e-165 AT3G05620 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013200 [exp] 472 / 2e-162 AT3G05620 702 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 446 / 2e-151 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 446 / 2e-151 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 430 / 1e-145 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.002G202500 [exp] 425 / 1e-143 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 424 / 7e-143 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.011G025400 [exp] 421 / 3e-142 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.018G051400 [exp] 419 / 5e-141 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010170 [exp] 694 / 0 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 598 / 0 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 475 / 2e-163 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 475 / 2e-163 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 420 / 8e-142 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10018103 [exp] 420 / 6e-141 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 416 / 6e-140 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10008203 [exp] 411 / 1e-138 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 404 / 5e-136 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 394 / 6e-133 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.006G134500.1 pacid=42768244 polypeptide=Potri.006G134500.1.p locus=Potri.006G134500 ID=Potri.006G134500.1.v4.1 annot-version=v4.1 ATGACTTTTTCACACCCCACTAGAATGTCTAAAATCTCAACTCTTTCACTCTTCCTTTTGTTGCTTACATTTTTCCTCCCTGTATGTACTGCACGTGCAA GTTCCATCACTGATGATCTCCAGAATAACTGCTTGAAGGTACCTGTAAATCAATTTGTGGGATCTTTGACGAGCACTCTTGATATAATCCGAGATGTCAT CTCTATAATCTCAAATTTCGGCAATGTTTTTGGTGACATTCGCCTTACCAATGCCATAACTGATTGTCTTGACTTGCTCGACTTCTCTGCTGATGAGTTG AGCTGGTCCATGTCTGCTTCCCAGAATCCTAATGGTAAACACAACAGCACCGGCGATTTGAGTTCTGATTTAAGGACATGGTTAAGTGCTGCACTTGTTA ACCAGGACACATGCATTGAAGGATTTGATGGTACTAACAACATTCTTAAAGGTCTGGTGTCAGGTAGCCTTAACCAAATCACTTCATCAGTCCAAGAACT TCTCAAGAACGTGGACCCACATACCAACTCCAAGTCCAGTGGAGGTGGCTTCAGTGGTAGCAAAAGTGGCAATAATGACCGATTTCCTTCATGGGTTAAG CATGAAGACCGCAAATTGTTAGTCTTAAATGGGGTCACTCCTAATGTAATTGTAGCAGCAGATGGGACTGGGAATTTCACTAAGATAATGGATGCAGTAG CAGCTGCACCTGATTATAGCATGCATCGACACATCATTTACATTAAGAAAGGTGTGTACAATGAATATGTGGACATCAAGAAGAAGAAATGGAATCTGAT GATGGTCGGAGAGGGTATGAATGCTACAATCATTACCGGTAACCGGAACTTTATCGATGGTTGGACAACTTTTCGCTCTGCAACCTTCGCGGTCAGCGGC AGAGGATTCATAGCTCGAGACATCACTTTTGAGAACACCGCAGGACCTTCAAAACACCAAGCAGTTGCTCTCCGATCTGATTCAGACCTATCAGTCTTCT TCCGGTGTGAAATTAAGAGCTACCAGGATTCACTCTATACACATACAATGCGTCAATTCTACCGGGAATGCCGTGTGAGTGGGACGGTGGATTTCATTTT CGGTGATGCAACTGCAGTGTTCCAAAACTGCCAGATTCTAGCCAGAAAAGGCCTACCAGACCAAAAGAACACGGTAACAGCTCATGGTCGGAAGGACCCA AATCAACCAACAGGCTACTCTTTCCAATTTTGCAACATCTCAGCAGATATTGATCTCTTGCCTTATGTCAACTCCTCCTACACTTACCTTGGCAGACCCT GGAAAAATTTCTCAAGAACCATAATTATGCAATCCTACATGAGCAATGCTATAAGACCAGAAGGATGGCTGGAGTGGAATGGCAATGTGTATTTGGATAC TTTGTACTACGGCGAATACATCAACTATGGCCCAGGAGCTGGTGTAGGTAGGAGGGTTAGGTGGCCTGGATTTCATATGTTGAACGATTCCACGCAGGCT AATAATTACACAGTGGCCCAATTCATTCAAGGCAACTTGTGGTTGCCATCAACAGGAGTGAGATACACAGCAGGATTGGAAGTTTAG
AA sequence Show only first row Show all	>Potri.006G134500.1 pacid=42768244 polypeptide=Potri.006G134500.1.p locus=Potri.006G134500 ID=Potri.006G134500.1.v4.1 annot-version=v4.1 MTFSHPTRMSKISTLSLFLLLLTFFLPVCTARASSITDDLQNNCLKVPVNQFVGSLTSTLDIIRDVISIISNFGNVFGDIRLTNAITDCLDLLDFSADEL SWSMSASQNPNGKHNSTGDLSSDLRTWLSAALVNQDTCIEGFDGTNNILKGLVSGSLNQITSSVQELLKNVDPHTNSKSSGGGFSGSKSGNNDRFPSWVK HEDRKLLVLNGVTPNVIVAADGTGNFTKIMDAVAAAPDYSMHRHIIYIKKGVYNEYVDIKKKKWNLMMVGEGMNATIITGNRNFIDGWTTFRSATFAVSG RGFIARDITFENTAGPSKHQAVALRSDSDLSVFFRCEIKSYQDSLYTHTMRQFYRECRVSGTVDFIFGDATAVFQNCQILARKGLPDQKNTVTAHGRKDP NQPTGYSFQFCNISADIDLLPYVNSSYTYLGRPWKNFSRTIIMQSYMSNAIRPEGWLEWNGNVYLDTLYYGEYINYGPGAGVGRRVRWPGFHMLNDSTQA NNYTVAQFIQGNLWLPSTGVRYTAGLEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33220		PME44, ATPME44	A. THALIANA PECTIN METHYLESTER...		Potri.006G134500 [exp]	0	1
AT5G50175			unknown protein		Potri.015G083900 [exp]	14.56	0.8568
AT2G40980			Protein kinase superfamily pro...		Potri.004G137600 [exp]	17.94	0.8471
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	20.39	0.8321
AT3G17430			Nucleotide-sugar transporter f...		Potri.010G001700 [exp]	25.09	0.8310
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.001G110300 [exp]	27.96	0.8287
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Potri.013G124400 [exp]	30.19	0.8484
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Potri.003G095400 [exp]	31.04	0.8536
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Potri.009G064300 [exp]	34.07	0.8432	Pt-DRT100.1
AT5G62890			Xanthine/uracil permease famil...		Potri.012G077400 [exp]	36.66	0.8146
AT3G44610			Protein kinase superfamily pro...		Potri.008G024000 [exp]	37.94	0.8513

Compare expression of checked genes

Potri.006G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.