Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26440 682 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 419 / 1e-141 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G43270 416 / 1e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 404 / 1e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 389 / 2e-129 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 382 / 2e-126 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 379 / 1e-125 ATPMEPCRA methylesterase PCR A (.1) AT3G10720 380 / 3e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT2G47550 378 / 3e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 377 / 6e-125 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202500 [exp] 428 / 7e-145 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 404 / 1e-135 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.011G025400 [exp] 392 / 1e-130 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.018G051400 [exp] 391 / 4e-130 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.005G022800 [exp] 390 / 2e-129 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 389 / 3e-129 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 389 / 6e-129 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.006G134500 [exp] 387 / 6e-129 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) Potri.014G127000 [exp] 385 / 6e-128 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008203 [exp] 410 / 1e-137 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 384 / 2e-127 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10003933 [exp] 380 / 9e-126 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10015210 [exp] 379 / 2e-125 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 377 / 8e-125 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 378 / 2e-124 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 376 / 2e-124 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 376 / 2e-124 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 371 / 4e-124 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 376 / 7e-124 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.006G134600.1 pacid=42768377 polypeptide=Potri.006G134600.1.p locus=Potri.006G134600 ID=Potri.006G134600.1.v4.1 annot-version=v4.1 ATGGCTTTCTCCATTCTAAAGCTTCTTCTCCTGCTCATTTCTTCTGTCTTCTTCACTTCTACATGGGCTCTCAACACATCTTCTACAACTTCTCTAGACG CCCATCTCTCTACAATAAGAACTTTTTGCAATAGCAGACCATATCCAGATGCCTGCTTTAACTCGTTAAAACTTTCCATCTCAATAAACATCAGTCCAAA CATCATCAACTTGCTCCTCCAAACCCTCCAAACTGCGATATCTGAGGCCGGAAAACTAACCAATCTATTCTCAATTGCTGGTGGTTCAAACATCATTGAA AGACAAAGAGGAACAATCCAAGATTGCTTAGAACTACATCAAATCACGGTCTCATCTTTACAAAGATCAGTTTCAAGAGTCCGTGCAGGTGATTCTCGTA AACTAGTTGATGCAAGGGCCTATCTTAGTGCAGCAGTCACCAACAAGAACACTTGCTTAGAAGGCCTAGATTCTGCTTCTGGTCCTTTGAAGCCTGCTTT ATTGAATAGCTTGACTAGTACATATCAGCATGTTACCAACTCTCTTTCAATGCTTCCTAAGTCAAAACACAGCAAGCAGGGTTACAAAAACCGTCGCCTT TTAGGATTTCCAAAATGGATGTCAAAGAAAGATCGCCGGATTTTGCAAAGTGATGAAGATGAATATGACCCTAGTGAAGAGCTTATAGTAGCTGCTGATG GCACTGGAAATTTTAGTACCATCACTGATGCCATAAACTTTGCTCCAAATAATAGTTATGATAGAATAATTATTCGAGTTAGAGAAGGAGTATATGCGGA GAATGTGGAAATTCCAATCTACAAAACCAACATTGTTTTGCTTGGAGATGGAACTGACGTCACTTTCATTACTGGTAACAGAAGTGTAGTTGATGGTTGG ACTACTTTCAGATCTGCAACTCTTGCGGTATCTGGTGATGGTTTTCTGGCACTGGACATAACCATTGACAACACAGCTGGACCAGAGAAGCACCAGGCAG TTGCCCTTCGAGTAAGTGCAGACCTAGTAGCACTCTACAGGTGCTCCATTAATGGCTACCAGGATACATTATATGTGCACTCATTTCGACAATTTTATCG AGAGTGTGACATATCCGGGACCATAGATTACCTATTCGGCAATGCTGCAGTAGTCTTCCAGGCATGTAATATTATATCCAGAAAGCCACTGCCTAACCAA TTCACAGTCATTACTGCCCAGTCTAAAGAAACCCCAGATGAGTATACAGGAATCTCGATACAAAATTGTTCAATTTTGGCTACAGAAGATTTGTACTCCA ACTCAAACACTGTTAAGAGCTACCTCGGGAGGCCATGGAAAGTTTATTCAACGACGGTTGTTCTTGAGTCCTACATTGATGATTTCATTAATCCAGAAGG TTGGAGCAAGTGGTCTAATGATGATGATCAAGGATTAGACACTTTGTATTATGGAGAGTACGAAAATTATGGGCCTGGTTCTGGGACCGAAAACCGGGTT ACATGGGCAGGGTACCATGTGATGGATGATATTGATGCTTATAACTTTACAGTATCATATTTCATAACTGGTGATGAATGGCTGGATTCCACTTCAATTC CTTATTATGATGGGATTCAAAGCTAG
AA sequence Show only first row Show all	>Potri.006G134600.1 pacid=42768377 polypeptide=Potri.006G134600.1.p locus=Potri.006G134600 ID=Potri.006G134600.1.v4.1 annot-version=v4.1 MAFSILKLLLLLISSVFFTSTWALNTSSTTSLDAHLSTIRTFCNSRPYPDACFNSLKLSISINISPNIINLLLQTLQTAISEAGKLTNLFSIAGGSNIIE RQRGTIQDCLELHQITVSSLQRSVSRVRAGDSRKLVDARAYLSAAVTNKNTCLEGLDSASGPLKPALLNSLTSTYQHVTNSLSMLPKSKHSKQGYKNRRL LGFPKWMSKKDRRILQSDEDEYDPSEELIVAADGTGNFSTITDAINFAPNNSYDRIIIRVREGVYAENVEIPIYKTNIVLLGDGTDVTFITGNRSVVDGW TTFRSATLAVSGDGFLALDITIDNTAGPEKHQAVALRVSADLVALYRCSINGYQDTLYVHSFRQFYRECDISGTIDYLFGNAAVVFQACNIISRKPLPNQ FTVITAQSKETPDEYTGISIQNCSILATEDLYSNSNTVKSYLGRPWKVYSTTVVLESYIDDFINPEGWSKWSNDDDQGLDTLYYGEYENYGPGSGTENRV TWAGYHVMDDIDAYNFTVSYFITGDEWLDSTSIPYYDGIQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26440			Plant invertase/pectin methyle...		Potri.006G134600 [exp]	0	1
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	33.43	0.5821
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Potri.011G054000 [exp]	46.46	0.6245
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.005G076300 [exp]	89.46	0.6098

Compare expression of checked genes

Potri.006G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.