Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53840 504 / 2e-173 ATPME1 pectin methylesterase 1 (.1) AT3G14300 484 / 8e-161 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G04960 442 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 432 / 1e-145 RHS12 root hair specific 12 (.1) AT5G53370 370 / 3e-121 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G11580 368 / 2e-120 ATPMEPCRA methylesterase PCR A (.1) AT2G45220 362 / 5e-119 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 358 / 4e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 358 / 4e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 358 / 2e-116 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072700 [exp] 625 / 0 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 539 / 0 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.010G247600 [exp] 473 / 3e-161 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 470 / 4e-160 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.012G014500 [exp] 394 / 6e-130 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 386 / 4e-127 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 382 / 3e-126 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.011G025400 [exp] 382 / 6e-126 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.015G127700 [exp] 379 / 3e-125 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003934 [exp] 548 / 0 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10037456 [exp] 439 / 5e-151 AT1G53840 461 / 3e-160 pectin methylesterase 1 (.1) Lus10033399 [exp] 427 / 2e-143 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10034859 [exp] 396 / 4e-131 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10039927 [exp] 384 / 1e-125 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 373 / 1e-121 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 362 / 5e-120 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 359 / 2e-117 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 356 / 4e-117 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 353 / 2e-114 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.006G134800.1 pacid=42769332 polypeptide=Potri.006G134800.1.p locus=Potri.006G134800 ID=Potri.006G134800.1.v4.1 annot-version=v4.1 ATGGATCCAAGTCACAGTTTCACTAGCCATAGCAAAGTAGACGAGCAAGCAGAGCAAGCATTTCGCAGGAAGGCCCGGAAACGTCTCATAGTCATTGTTG TCTCTGCCGTGGTTTTGGTAACAATCATCATTTGTGCATTAGTAGGTACTTCTGTATCAGCGGACAATAAATCCAATGGCAAAAATCCTTCATCTCAAAC TAGCGAAGCTCAGTACATCAGAGCCATGTGTAATGCGACAAGGTACCCTGATTCATGCTATTCAAGCATGTCTTCATCTCTTAAAGCCTCCTCTAATGAT ACCAATCCAAACCCAGATCCTAAAACGTTATTCTTGTTGTCTCTCCAAGTTTCACTCATTGAGCTCACAAAACTTTCTTCCTTGCCTCAATGGATCATGT CCTCAAATAGTTTTAAGAATGAGACCAGTGATTCCCTTGTACAATCTGCATTGCATGCTTGTGAGATTCTCTTTCTGGACGCCATTGATCAGGTCAATGA ATCCATGTCATCCATACAAGTTGGCCAAGGAGACAAGACCGTGTTCTTGACCTCTAAAATCAACGACATCAGAACTCGGCTAAGCACAGCAATCACGGAT CAAGATACATGCATTGCTGGGCTGCAAGACACCGCCAAGCACTTGATCTTAACCGATGGGGTGAGATATGCTATGACCAATTCCACTGAGTTCACTAGCA ACAGCTTGGCAATTGCGTCTAATTTAGTGAAAATACTTGATGATCAATTAGGCATCCCAATTCATCGCAAACTCTTAACAGTTGATCATGACCTTGACAT GGGCTTCCCTTCGTGGGTCAACAAAAGTGACAGGAGATTGCTACAGCAGGAAAATCCTGAACCGAATCTAACAGTAGCGAAGGATGGTAGTGGGGCTTTC AAGACTATAAGAGAGGCAGTGGATTCCATCCCCAAGAATAGCAAATCAAGATTTGTCATATACGTAAAGGAGGGTATTTACGTAGAGAATGTGAAGATAG AAAAGCAACAGTGGAATTTCATGATGTATGGTGATGGAATGAACAAGACCATAATCTCTGGCAGCTTAAATAATGTCGATGGCGTTACCACATTCTTATC TGGTACCTTAATTGCTGAGGGGAGGGGATTCATTGCAAAAGACATGGGCTTCAAGAACACAGCAGGACCGCAGAAAGAACAAGCAGTAGCCGTACGCTCA TCATCAGACCAGTCAATCTTTCATCGCTGCTCCTTCGATGCATATCAAGACACTCTCTACACGCATTCCAATCGTCAATTCTACCGAGAGTGCCGGATTA TAGGCACCATTGATTTCATTTTCGGCAATGCAGCTGCAATCTTCCAAAACTGTACCATACAGCCAAGGCAGCCCATGGAAAAGCAAAACAACACCATCAC TGCCCAAAGTAGGACTGACCCAAATCAAAATACTGGCATCTCCATCCAACAATGTCAGATGACCCCGTTTGACAATCTGACGGTTCCCACATTTCTTGGC AGGCCTTGGAGGGATCATGCAACTACCGTAATCATGGAATCATACATTGGAGATTTCCTGGACCCCTTAGGATGGATCCCTTGGGAGCCAGAAACGGACC CACCCAACACTACATTTTATGCTGAGTATCAAAATTTTGGGCCTGGGTCAGCGATAGATAAAAGAGCAGGATGGCTTGGTGTTCTGCCCAATATTACATC CGATGAGGCAGCAAAATTTACAGTGGAGCCCTTCATTCAAGGAAGGCAGTGGTTGGTGCAAGCAAATGTGTTTTTTCAAGACACATTGTGA
AA sequence Show only first row Show all	>Potri.006G134800.1 pacid=42769332 polypeptide=Potri.006G134800.1.p locus=Potri.006G134800 ID=Potri.006G134800.1.v4.1 annot-version=v4.1 MDPSHSFTSHSKVDEQAEQAFRRKARKRLIVIVVSAVVLVTIIICALVGTSVSADNKSNGKNPSSQTSEAQYIRAMCNATRYPDSCYSSMSSSLKASSND TNPNPDPKTLFLLSLQVSLIELTKLSSLPQWIMSSNSFKNETSDSLVQSALHACEILFLDAIDQVNESMSSIQVGQGDKTVFLTSKINDIRTRLSTAITD QDTCIAGLQDTAKHLILTDGVRYAMTNSTEFTSNSLAIASNLVKILDDQLGIPIHRKLLTVDHDLDMGFPSWVNKSDRRLLQQENPEPNLTVAKDGSGAF KTIREAVDSIPKNSKSRFVIYVKEGIYVENVKIEKQQWNFMMYGDGMNKTIISGSLNNVDGVTTFLSGTLIAEGRGFIAKDMGFKNTAGPQKEQAVAVRS SSDQSIFHRCSFDAYQDTLYTHSNRQFYRECRIIGTIDFIFGNAAAIFQNCTIQPRQPMEKQNNTITAQSRTDPNQNTGISIQQCQMTPFDNLTVPTFLG RPWRDHATTVIMESYIGDFLDPLGWIPWEPETDPPNTTFYAEYQNFGPGSAIDKRAGWLGVLPNITSDEAAKFTVEPFIQGRQWLVQANVFFQDTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.006G134800 [exp]	0	1
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	4.00	0.9800	GER2.33
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.011G148900 [exp]	6.55	0.9587
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	6.78	0.9813
AT5G27730			Protein of unknown function (D...		Potri.006G122500 [exp]	10.00	0.9778
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	14.17	0.9780
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000200 [exp]	14.96	0.9688	Pt-MALD1.2
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	23.10	0.9724
AT5G49350			Glycine-rich protein family (....		Potri.013G158300 [exp]	23.76	0.9740
AT1G71480			Nuclear transport factor 2 (NT...		Potri.013G100600 [exp]	26.32	0.9719
AT3G20190			Leucine-rich repeat protein ki...		Potri.018G002600 [exp]	33.00	0.9712

Compare expression of checked genes

Potri.006G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.