Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20860 468 / 3e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 406 / 5e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 392 / 2e-130 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 384 / 3e-127 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 380 / 2e-125 ATPME3 pectin methylesterase 3 (.1) AT5G51490 369 / 3e-122 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 368 / 1e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 367 / 7e-121 ATPME2 pectin methylesterase 2 (.1) AT1G11580 363 / 9e-120 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 356 / 3e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013700 [exp] 400 / 4e-133 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 399 / 4e-133 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 395 / 1e-131 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 394 / 1e-131 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 393 / 2e-131 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.003G072800 [exp] 388 / 7e-129 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.012G126800 [exp] 385 / 1e-128 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 384 / 2e-128 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 385 / 1e-127 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017665 [exp] 582 / 0 AT5G20860 403 / 4e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033621 [exp] 557 / 0 AT5G20860 383 / 4e-128 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 388 / 4e-129 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10018103 [exp] 387 / 4e-128 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 374 / 8e-124 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 373 / 2e-123 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 365 / 2e-121 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 369 / 5e-121 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 362 / 1e-119 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 359 / 3e-118 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.006G135100.1 pacid=42770236 polypeptide=Potri.006G135100.1.p locus=Potri.006G135100 ID=Potri.006G135100.1.v4.1 annot-version=v4.1 ATGGGACTGCTGGTTTTGGTGGTGCTTTGGCTGCTCGGATATACATTAGGAGGGGCGTCCATGTCATGGGCTGCAACTCACAGTTTCCAAATGCAAGTCC AAACACAGTGCAGCTACACTAGATATCCAGGCCTCTGTCTCCAGTCCTTGAAGGAGTTCCAAGATCATCCTCTTGACATCATGACTGCTCTTGTTAACAA AACTATATCTGAGACCAGGCTGCCCAATTCATACTTCGAAACACTGAGCTCCCATTTGGAAGCTCAAGAAGCCGAACGTGTCCTATCCGTCACAGACTAC TGCAAAAACCTGATGAGTATGTCTCTGAAACGGTTAGACCAGTCGTTATTGGCACTCAAAGATTCTCCAAGAAAAAACAAGCATGACATACAGACATGGC TAAGTGCTGCTTTGACCTTTCAACAAGCTTGCAAAGATTCTACCGACAGCCTTAGTCTCTCTGGTGACCTCATGCCACGTATTTCTGAAAAAATGGATTA TCTCTCACAACTGGCCAGTAACTCTTTAGCCCTAGTCAGCAGGATTACTCATGATTATGGGACTAAGCTTAAAAACAGCACTAAAAGACGACGTGCAGAG GAGAAATCACAAGGTTTTCCCAAATGGGTATCAGCGAAAGATCGAAAACTACTTCAAACTAGCACCATCAAGGCCAATGCTGTGGTTGCAAAAGATGGAA CAGGTAATTATAAAACAATATCGGAAGCTATAAACGCTGCTCCTGGGAAACGGTTTGTGATTTACGTGAAGGCAGGAGTCTACAAGGAGAAGATTCGTAG CAACAAAGATGGTATCACCTTGATAGGAGATGGTAAATACTCTACTATTATTGTTGGTGATGACAGTGTTGCCGGCGGCTCTTCCATGCCTGGTTCTGCT ACATTTACAATCACAGGTGATGATTTCATTGCTCGAGATATTGGATTTCAAAACACGGCAGGCCCCGGAGGAGAACAGGCCTTGGCTCTACATGTAGCTT CTGACCACTCAGTTTTCTACCGATGCAGCATAGCTGGCTACCAAGACACTCTATATGCAGTTGCTCTCCGTCAATTCTATAGAGAATGCGACATTTTCGG CACCATTGACTTCATTTTCGGCAACGCTGCTGCTGTCTTCCAGAGTTGCAACTTGGTCCTTCGGAAGCCGCACGGTGATAGCTACAATGTGATTCTAGCA AATGGAAGGGATGACCCTGGACAAAACACTGGTTTCTCAGTACAAAGTTGTAGGATTACTGCGAGCTCCGATTTTTCTCCGGTTATGCACAACTATAACT CATATCTTGGGAGGCCCTGGAAACAGTATTCAAGAACAGTGGTGATGGAATCAAGCATTGGTGATGCTATTTCCTCAAGAGGATGGATTGAGTGGCCTGG TGAAGGTTCCTATGCTAAGTCACTCTACTTTGCTGAATACTCGAACACAGGACCTGGCGCTGGAACTTCTAACAGGGTAAAATGGCCAGGGTTCCATGTT ATTGGACCTTCTGAAGCTACCAAATTTACTGTCGGTAATCTTATTGCTGGAACCTCATGGCTGCCTTCTACTGGAGTAACTTTCATTTCTGGCCTCCAGT GA
AA sequence Show only first row Show all	>Potri.006G135100.1 pacid=42770236 polypeptide=Potri.006G135100.1.p locus=Potri.006G135100 ID=Potri.006G135100.1.v4.1 annot-version=v4.1 MGLLVLVVLWLLGYTLGGASMSWAATHSFQMQVQTQCSYTRYPGLCLQSLKEFQDHPLDIMTALVNKTISETRLPNSYFETLSSHLEAQEAERVLSVTDY CKNLMSMSLKRLDQSLLALKDSPRKNKHDIQTWLSAALTFQQACKDSTDSLSLSGDLMPRISEKMDYLSQLASNSLALVSRITHDYGTKLKNSTKRRRAE EKSQGFPKWVSAKDRKLLQTSTIKANAVVAKDGTGNYKTISEAINAAPGKRFVIYVKAGVYKEKIRSNKDGITLIGDGKYSTIIVGDDSVAGGSSMPGSA TFTITGDDFIARDIGFQNTAGPGGEQALALHVASDHSVFYRCSIAGYQDTLYAVALRQFYRECDIFGTIDFIFGNAAAVFQSCNLVLRKPHGDSYNVILA NGRDDPGQNTGFSVQSCRITASSDFSPVMHNYNSYLGRPWKQYSRTVVMESSIGDAISSRGWIEWPGEGSYAKSLYFAEYSNTGPGAGTSNRVKWPGFHV IGPSEATKFTVGNLIAGTSWLPSTGVTFISGLQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20860			Plant invertase/pectin methyle...		Potri.006G135100 [exp]	0	1
					Potri.011G102400 [exp]	3.16	0.9607
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340400 [exp]	4.69	0.9607
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	8.83	0.9487
AT3G62950			Thioredoxin superfamily protei...		Potri.002G208500 [exp]	10.24	0.9477
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.017G071000 [exp]	10.39	0.9521
AT3G20395			RING/U-box superfamily protein...		Potri.001G435800 [exp]	11.31	0.9306
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340300 [exp]	13.85	0.9514
AT1G32250			Calcium-binding EF-hand family...		Potri.014G030200 [exp]	14.83	0.9492
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	15.09	0.9344
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	15.49	0.9415

Compare expression of checked genes

Potri.006G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.