Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20850 622 / 0 ATRAD51 RAS associated with diabetes protein 51 (.1) AT3G22880 342 / 7e-117 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT2G45280 100 / 1e-23 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT5G57450 98 / 4e-23 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT2G28560 89 / 6e-20 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT1G07745 64 / 3e-11 SSN1, ATRAD51D, RAD51D SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) AT1G79050 52 / 2e-07 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081500 [exp] 344 / 1e-117 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.008G158500 [exp] 130 / 2e-36 AT3G22880 238 / 5e-79 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.014G068100 [exp] 93 / 2e-21 AT2G45280 398 / 2e-139 RAS associated with diabetes protein 51C (.1.2) Potri.018G093100 [exp] 79 / 2e-16 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Potri.001G438900 [exp] 48 / 5e-06 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027654 [exp] 533 / 0 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10039928 [exp] 530 / 0 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10039383 [exp] 321 / 2e-108 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10006625 [exp] 320 / 4e-108 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10000790 [exp] 102 / 5e-25 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10038467 [exp] 87 / 5e-19 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10023341 [exp] 87 / 2e-18 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10004464 [exp] 77 / 1e-15 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10015220 [exp] 67 / 2e-12 AT1G07745 273 / 6e-91 SUPPRESOR OF SNI1, homolog of RAD51 D (.1.2) Lus10042462 [exp] 50 / 2e-06 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08423 [poplar] [flax] Rad51 Rad51 CL0198 [poplar] [flax] HHH PF14520 [poplar] [flax] HHH_5 Helix-hairpin-helix domain
Representative CDS sequence Show only first row Show all	>Potri.006G135200.2 pacid=42769823 polypeptide=Potri.006G135200.2.p locus=Potri.006G135200 ID=Potri.006G135200.2.v4.1 annot-version=v4.1 ATGGAGCAACAAAGAAACCAAAAGGCTGTTAATCAACAACAACATGAGGATCATGAAGAGGTGCAACATGGGCCTTTCCCTGTTGAACAGCTTCAGGCGT CAGGCATAGCTTCCCTTGACGTAAAGAAGCTTAAAGATGCGGGTCTCTGCACAGTTGAATCTGTTGCCTTTTCTCCCAGGAAAGAGCTTCTGCAAATTAA AGGAATCAGTGAAGCTAAAGTTGACAAAATCATCGAAGCAGCTTCCAAACTGGTGCCCCTGGGTTTTACTAGTGCTAGCCAACTCCATGCTCAGAGGCAA GAGATAATTCAGATAACATCTGGGTCAAGAGAGCTTGACAAAATTTTGGAAGGAGGGGTTGAGACAGGATCTATTACTGAAATGTATGGTGAGTTCCGCT CTGGAAAAACTCAGCTGTGCCACACGCTTTGCGTCACTTGCCAACTTCCATTAGATCAAGGAGGAGGTGAGGGAAAAGCAATGTACATAGATGCAGAGGG CACATTCAGGCCACAAAGACTCTTACAGATAGCTGATAGGTTTGGGCTGAATGGCGCTGATGTTTTGGAGAATGTGGCTTATGCTCGGGCATATAACACC GATCATCAATCAAGGCTTTTGCTCGAAGCAGCTTCAATGATGGTGGAAACAAGGTTTGCTCTTATGATAGTAGACAGTGCTACTGCTCTATACAGAACAG ATTTTTCTGGAAGGGGAGAGCTTTCAGCTCGGCAGATGCATCTAGCAAAGTTCCTTAGGAGCCTTCAGAAGTTAGCAGATGAGTTCGGTGTGGCTGTTGT CATTACAAACCAAGTAGTTGCACAAGTTGATGGTTCTGCTATTTTTGCTGGACCTCAAATCAAGCCTATTGGTGGTAACATCATGGCTCATGCTTCTACA ACAAGGCTTGCTCTTCGGAAGGGAAGAGGGGAGGAGCGCATCTGTAAAGTAATAAGTTCTCCTTGTTTAGCTGAAGCTGAAGCACGGTTCCAGATCTCTG CTGAAGGCGTCACTGATGTCAAGGACTGA
AA sequence Show only first row Show all	>Potri.006G135200.2 pacid=42769823 polypeptide=Potri.006G135200.2.p locus=Potri.006G135200 ID=Potri.006G135200.2.v4.1 annot-version=v4.1 MEQQRNQKAVNQQQHEDHEEVQHGPFPVEQLQASGIASLDVKKLKDAGLCTVESVAFSPRKELLQIKGISEAKVDKIIEAASKLVPLGFTSASQLHAQRQ EIIQITSGSRELDKILEGGVETGSITEMYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNT DHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHAST TRLALRKGRGEERICKVISSPCLAEAEARFQISAEGVTDVKD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20850		ATRAD51	RAS associated with diabetes p...		Potri.006G135200 [exp]	0	1
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	1.00	0.9702
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	2.00	0.9679
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.005G210000 [exp]	5.19	0.9245
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	5.29	0.9318
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.014G021100 [exp]	7.34	0.9288	CYCA3.2
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	9.16	0.9367	Pt-SYP111.1
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	9.79	0.8988
AT3G54560		HTA11	histone H2A 11 (.1)		Potri.002G046400 [exp]	10.58	0.9248
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	10.58	0.9255
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	10.95	0.9303

Compare expression of checked genes

Potri.006G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.