Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34630 592 / 0 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT1G17050 224 / 4e-69 SPS2 solanesyl diphosphate synthase 2 (.1) AT1G78510 220 / 4e-68 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT4G36810 91 / 4e-20 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 83 / 2e-17 Terpenoid synthases superfamily protein (.1) AT3G20160 79 / 7e-16 Terpenoid synthases superfamily protein (.1) AT3G14510 76 / 5e-15 Polyprenyl synthetase family protein (.1) AT2G23800 76 / 8e-15 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 76 / 1e-14 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14550 69 / 1e-12 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138800 [exp] 761 / 0 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.001G380500 [exp] 239 / 7e-75 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G099500 [exp] 181 / 1e-52 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 181 / 2e-52 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G101200 [exp] 160 / 5e-45 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.007G031100 [exp] 99 / 1e-22 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 97 / 4e-22 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 84 / 1e-17 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 82 / 3e-17 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023287 [exp] 559 / 0 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10005570 [exp] 234 / 7e-73 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10013703 [exp] 236 / 4e-71 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 226 / 2e-69 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10016803 [exp] 86 / 2e-18 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 84 / 2e-17 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 82 / 6e-17 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 71 / 3e-13 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 69 / 3e-13 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 70 / 1e-12 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.006G135300.2 pacid=42769392 polypeptide=Potri.006G135300.2.p locus=Potri.006G135300 ID=Potri.006G135300.2.v4.1 annot-version=v4.1 ATGTCATTGTCTTGGATTTTGAGGATCACAAGAAATGGCAGCCATTGGTTTGTCTCTCATCGACCCTCATCTTATGGACTCTTGCTCTCCAACAATTCCC ACTCTTCTACTCGAAAGGTTTTCAATTGCAGAGAAACTTATTCTTGGACTGTACCTTCCTTTCATGTTTTCAAACATCAGATTCATCACCAGAGCAGTTC CTTAGTGGAGGAACAGCTTGACCCATTTTCACTTGTTGCTGATGAGCTATCACTTCTCGCTAATAGATTGCGGTCAATGGTAATTGCTGAGGTTCCTAAG CTTGCCTCAGCTGCCGAGTACTTTTTTAAAATGGGAGTACAAGGAAAGAGGTTCCGTCCCACGGTTTTGTTGCTGATGGCGACAGCTTTGAATGTGCGTA TACTTGAAACGGAAACTGGCAGTGAAGGAGATGCTTTGACAACAGAACTACGTAAAAGACAGCAATCTATAGCTGAAATTACCGAGATGATCCATGTGGC AAGTCTTCTGCATGATGATGTATTGGATGATGCAGATACGAGACGTGGTATTGGTTCATTAAATCTTGTTATGGGCAATAAGGTGGCAGTACTTGCTGGA GATTTTCTACTTTCACGAGCTTGTGTAGCCCTTGCTTCTTTGAAAAACACAGAAGTTGTTACATTACTAGCGACAGCTGTAGAGCATCTTGTTAATGGTG AAACTATGCAGATGACTTCGACATCTGAGCAACGTTGTAGCATGGAGTATTATATGCAAAAGACGTACTACAAGACTGCATCTTTGATTTCAAATAGCTG CAAGGCAATTGCCCTTCTTGCTGGGCAAACAACAGAAGTTGCAATGTTGGCTTTTGAGTATGGCAAAAATCTGGGATTGGCATATCAATTGATTGATGAT GTTCTTGATTTCACGGGAACTTCTGCTTCCCTTGGAAAGGGTTCATTATCTGACATTCGCCATGGAATTGTAACAGCTCCAATATTGTTTGCCATGGAGG AGTTCCCTCAGTTGTGTTCAGTTATTGACCGGGGCTTTGACAAGCCTGAAAACATTGATGCAGCCCTTGAGTACCTTGGGAAGAGCCGTGGAATACAGAG AACAAGGGAGCTAGCTGCAAAGCATGCTAATCTTGCTGCAGCAGCTATTGATTCTTTACCTGAAACTGATGACGAAGAAGTAAGAAAATCACGGAGGGCG CTAGTTGATCTTACTCAAAGAGTAATCACAAGAAATAAATGA
AA sequence Show only first row Show all	>Potri.006G135300.2 pacid=42769392 polypeptide=Potri.006G135300.2.p locus=Potri.006G135300 ID=Potri.006G135300.2.v4.1 annot-version=v4.1 MSLSWILRITRNGSHWFVSHRPSSYGLLLSNNSHSSTRKVFNCRETYSWTVPSFHVFKHQIHHQSSSLVEEQLDPFSLVADELSLLANRLRSMVIAEVPK LASAAEYFFKMGVQGKRFRPTVLLLMATALNVRILETETGSEGDALTTELRKRQQSIAEITEMIHVASLLHDDVLDDADTRRGIGSLNLVMGNKVAVLAG DFLLSRACVALASLKNTEVVTLLATAVEHLVNGETMQMTSTSEQRCSMEYYMQKTYYKTASLISNSCKAIALLAGQTTEVAMLAFEYGKNLGLAYQLIDD VLDFTGTSASLGKGSLSDIRHGIVTAPILFAMEEFPQLCSVIDRGFDKPENIDAALEYLGKSRGIQRTRELAAKHANLAAAAIDSLPETDDEEVRKSRRA LVDLTQRVITRNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Potri.006G135300 [exp]	0	1
AT5G40510			Sucrase/ferredoxin-like family...		Potri.001G344400 [exp]	8.36	0.8271
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	13.56	0.8515
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	17.49	0.8065
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	18.22	0.7736	Pt-SPE1.1
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.003G086900 [exp]	21.81	0.8295
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022600 [exp]	28.56	0.8238
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.003G148400 [exp]	37.54	0.7671
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	40.24	0.8151	PtrAOH3,ATH2.3
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051900 [exp]	42.84	0.8106
AT3G59880			unknown protein		Potri.017G002100 [exp]	45.49	0.7863

Compare expression of checked genes

Potri.006G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.