Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43240 1016 / 0 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064500 [exp] 1334 / 0 AT3G43240 1029 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039924 [exp] 1171 / 0 AT3G43240 1006 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1) Lus10027658 [exp] 1153 / 0 AT3G43240 1001 / 0.0 ARID/BRIGHT DNA-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01388 [poplar] [flax] ARID ARID/BRIGHT DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G135500.3 pacid=42767393 polypeptide=Potri.006G135500.3.p locus=Potri.006G135500 ID=Potri.006G135500.3.v4.1 annot-version=v4.1 ATGATGTTTCATGCTCAAGGTCCTTTAAGGAATCATTGTACTCTCCTTGCTGTTCTTTGTGGTAAAAGTGGTGATAATAAGCAGAAGCAACCTCTCTCTG ATGATAAACCTAGATTTCCTTTTCCGGAACTTGCTTCAGCTGGGCGGCTGGAGGTTCAGGTACTGACTAATCCGAGCACTGATGAGTTCCAGCGTGTGCT TCATTCATTGGAGCCCAGTATCGTGTATTTTCAAGGTGAGCAGATTGAAGATAGTGAAGAAATTGGACCTTTAAGATGGGGAGATATTGACTTGTCCACC CCAGAATCCTTATGTGGACTATTTGGTTCCACATTGCCTCCCACGGTTTATTTAGAGATCCCCAATGGTGAAAAGTTGGCAGAGGCACTTCACTCCAAGG GAGTTCCATATGTTATATATTGGAAAAGCATGTTTTCATGTTATGCTGTTTCTCACTTTCGTCAAGCATTGTTGTCAGTGGTTCAAAGTTCTTGCAGCCA TACATGTGATGCTTTCCAACTCGCTTATGCATCTTTTAGGCTCTACTGTGGACGAAACAACAATACCCTAGCTTCCAATGGCCAGAAAGTTGGTGGTAAA CCTGGACCACAGTTACTCGGTGATCCACCAAAGTTTGATATTACTCTGCCCGAGGCAGATGATCAGGGTGAAGAAAGCTCTTCTGGGGCTCTTCCTGCTA TAAAAATATATGATGATGATGTGACCATGAGGTTTCTTGTTTGTGGACTTTCATGCACATTGGATGCATGTTTGTTGGAATCATTGGAGGATGGGCTTAA TGCTCTCTTGAACATCGAAATTCGTGGGAGTAAACTTCATAACCGGACAAGTGCTCCTCCACCTCCTCTTCAGGCAGGGACATTTTCTCGTGGTGTGGTG ACAATGCGATGTGATTTATCAACCTGCAGTTCCGCTCACATATCACTTTTAGTGTCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTTTTGGAGAATC ATATTAAAAATGAGCTTATTGAGAACAGTCAGCTAGTCCATGCATTGACTAGCTTTGAGGAAAGCAAATCACCTTCATCTGAGCCACGAAAGTCTGCTTC CATAGCCTGTGGGGCAAGTGTTTTTGAAGTTTCCATGAAGGTTCCTACATGGGCATCACAGGTTTTGCGGCAGCTGGCCCCAGATGTATCCTACCGCAGC TTAGTAATGCTAGGAATTGCCAGCATTCAAGGACTATCAGTTGCTTCTTTTGAAAAAGATGATGCTGATCGCCTCCTTTTCTTCTGTTCAGAGCAGGGCA AAGAGTCCCATCCACTCAACACTTTTCTCACTAGGCCTCCTACCTGGTTGATTCCTCCTGCACCTTGTCGAAAAAGATCCGAGCCAACCCGAGAAACTAA ACCCTTAACTTCTGGTCGTGGAGGTGAAAATGGAGGAAATGTTAAACACAAGTTTCATGTCGCTGCAATGAGACCAATTCCCCACACTCATCGTCATAAA ATGCTACCATTTTCTGGATTTTTTGATGCTGAAAGATATGATGGAGAACAAGCAAAGCCTAGCTTGCCACCTCCGCCACCAAAGCATAGTGTTGTCGGAC CTGCTCCTGTCACACATCGAAAATCATTGTCAAGCTCTTATCAGGCGCAGCAGATTATTTCTCTAAATCCACTGCCTTTGAAGAAACATGGATGTGGTAG ATCTCCAATACAAGTTTGCTCTGAGGAGGAATTCTTGAGGGATGTAATGCAGTTTTTGATTCTTCGTGGTCATTCTCGTCTAGTTCCTCAAGGTGGACTG GCAGAGTTTCCTGATGCCATTCTTAATGCAAAACGCCTTGACCTTTTTAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGGAATGGCA TCAACTGGAAAGGACAAGTATTCTCAAAGATGCGCAATCATACTTTGACTAATAGAATGACTGGTGTTGGCAATACACTAAAAAGGCACTATGAAACTTA CCTTTTGGAATATGAATTGGCCCATGACGATGTAGATGGAGAATGCTGCCTGTTGTGTCACAGTAGCGCAGCTGGTGATTGGGTTAACTGTGGAATATGT GGCGAGTGGGCTCACTTTGGCTGTGACAGGAGGCAGGGACTTGGTGCCTTTAAGGACTATGCTAAAACAGACGGGCTGGAGTATATTTGCCCCAACTGCA GCATTGCAAATTTCAAGAAAAAATCACAGAAAACTACAAATGGATATTAG
AA sequence Show only first row Show all	>Potri.006G135500.3 pacid=42767393 polypeptide=Potri.006G135500.3.p locus=Potri.006G135500 ID=Potri.006G135500.3.v4.1 annot-version=v4.1 MMFHAQGPLRNHCTLLAVLCGKSGDNKQKQPLSDDKPRFPFPELASAGRLEVQVLTNPSTDEFQRVLHSLEPSIVYFQGEQIEDSEEIGPLRWGDIDLST PESLCGLFGSTLPPTVYLEIPNGEKLAEALHSKGVPYVIYWKSMFSCYAVSHFRQALLSVVQSSCSHTCDAFQLAYASFRLYCGRNNNTLASNGQKVGGK PGPQLLGDPPKFDITLPEADDQGEESSSGALPAIKIYDDDVTMRFLVCGLSCTLDACLLESLEDGLNALLNIEIRGSKLHNRTSAPPPPLQAGTFSRGVV TMRCDLSTCSSAHISLLVSGSAQTCFNDQLLENHIKNELIENSQLVHALTSFEESKSPSSEPRKSASIACGASVFEVSMKVPTWASQVLRQLAPDVSYRS LVMLGIASIQGLSVASFEKDDADRLLFFCSEQGKESHPLNTFLTRPPTWLIPPAPCRKRSEPTRETKPLTSGRGGENGGNVKHKFHVAAMRPIPHTHRHK MLPFSGFFDAERYDGEQAKPSLPPPPPKHSVVGPAPVTHRKSLSSSYQAQQIISLNPLPLKKHGCGRSPIQVCSEEEFLRDVMQFLILRGHSRLVPQGGL AEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGIC GEWAHFGCDRRQGLGAFKDYAKTDGLEYICPNCSIANFKKKSQKTTNGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	0	1
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.003G064100 [exp]	2.44	0.8741
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Potri.003G077600 [exp]	4.79	0.8851
AT1G72390			unknown protein		Potri.001G165800 [exp]	7.74	0.8813
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G117900 [exp]	7.93	0.8487
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	9.79	0.8531
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	10.19	0.8579
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	11.53	0.8505
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	11.95	0.8481
AT1G23230			unknown protein		Potri.008G133300 [exp]	12.64	0.8345
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	14.42	0.8475

Compare expression of checked genes

Potri.006G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.