Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58010 190 / 9e-57 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 180 / 7e-53 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 181 / 8e-53 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT1G03040 152 / 1e-42 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G02590 148 / 2e-41 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 100 / 7e-23 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 94 / 7e-21 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT5G50915 92 / 8e-21 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68920 94 / 2e-20 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G27740 91 / 2e-20 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109500 [exp] 191 / 2e-55 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G186600 [exp] 191 / 2e-55 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.005G053500 [exp] 177 / 2e-51 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 172 / 1e-49 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 155 / 1e-43 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 154 / 2e-43 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.012G104900 [exp] 97 / 6e-22 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G117300 [exp] 94 / 1e-20 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.002G235400 [exp] 94 / 2e-20 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021846 [exp] 188 / 3e-55 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10014726 [exp] 176 / 5e-53 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 178 / 3e-52 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 176 / 2e-51 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 172 / 1e-49 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 172 / 8e-49 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 159 / 9e-45 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10036286 [exp] 150 / 2e-41 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10023562 [exp] 95 / 2e-21 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 94 / 3e-21 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G135600.3 pacid=42768729 polypeptide=Potri.006G135600.3.p locus=Potri.006G135600 ID=Potri.006G135600.3.v4.1 annot-version=v4.1 ATGATAAGTTCAAATCAAAGTGTGGAGTCCTTGGCCACTCAAGACACTTCATCTGTAGTTCTTGGCAGTGAGTCAGATTATGCTGTTGATAAAGTCTTAA TTTCTGAACAAGCTCGATTGCAAAATGATTGCCAGAATTGCAATGGAAACCCCTCCCCTGATGGAATGGCACGTGGAAACTTAAAATTTGGAAACACAGG CCTGCAATGCAATGGAATTCTTCCTACCCTGAGTTCTCTGAACTATCCAAATCAGCTTCCAATAGTTGGTGATTTGACATCGTATCTCTCTTTTTCTGAG GCAAGCAATGCTGGATGCAATGGAAGGGAACAATCTGAGTACCTGAGATCCTTAAAAAATCTGCAAAACTTATCATCAATCCCACAATTGTGGCCTTCAC AATCTTATGAGGGTGTTTCTTCTCTCCCTCCTTTGATGGGACAAGACAGAATAGAGGGATCTGGTCTTCGAGGAGGGAACTTGGATGATGATATGCATAT TATGGGGAAGGGATACATGGGCATGGATGAAATTCTCCGACTTGATAAGTTATCTGCATCACCTACTACAGAGGGGAAAGAAGATTTGCAAAGTTGTCCT TTCTCATCTGGCATAGCTGAGCCCAATGTAAACATGTCAATGAATCAATTATCATCTATGCCTCAGACTACATCAGCTGCTCCAGTAGAAGGCTGCAATG GAACTGGAAAAACTCGTGTAAGAGCACGACGTGGCCATGCCACTGACCCACATAGTATAGCTGAAAGGCTTCGAAGAGAGAAAATTGCTGAAAGGATGAA GAATCTGCAAGAACTTGTACCTAATTCCAATAAGGTTGACAAGGCATCTATGCTTGATGAGATCATAGAGTATGTCAAATTTCTTCAGCTCCAAGTCAAG GTGCTAAGCATGAGCAGGTTAGGGGCAGCCGGAGCAGTCATTCCTCTCCTCACAGATGGTCAACCTGAGGGTCATAATAGTTTGTCGCTCTCTCCATCAG CTGGTCTAGGAATTGATATTTCTCCATCTGCTGATCAGATTGCCTTTGAGCAAGAAGTACTTAAGCTACTGGAATCCGATGTGACCATGGCCATGCAATA TCTTCAAAGCAAAGGTCTCTGCCTCATGCCCATTGCTCTTGCTGCTGCCATATCCAGTGTTAAGGCATCGTTATCAGGTACAACTTCTGAGGAGAGGAAG AACAATGGCTACACCAGTGGTCTTGTTAGCAGCAGCAGCAGCATAACTGGCATTGACACCCATCCAATGTCCAATGATAACAATATTGCAACCGGTACAC TTAGCAGCAAAGGCATGATTGTCAATGGCTGCAATGAGGTTGTCAAGCAAGAAGTGCTGAAGAACACTTGA
AA sequence Show only first row Show all	>Potri.006G135600.3 pacid=42768729 polypeptide=Potri.006G135600.3.p locus=Potri.006G135600 ID=Potri.006G135600.3.v4.1 annot-version=v4.1 MISSNQSVESLATQDTSSVVLGSESDYAVDKVLISEQARLQNDCQNCNGNPSPDGMARGNLKFGNTGLQCNGILPTLSSLNYPNQLPIVGDLTSYLSFSE ASNAGCNGREQSEYLRSLKNLQNLSSIPQLWPSQSYEGVSSLPPLMGQDRIEGSGLRGGNLDDDMHIMGKGYMGMDEILRLDKLSASPTTEGKEDLQSCP FSSGIAEPNVNMSMNQLSSMPQTTSAAPVEGCNGTGKTRVRARRGHATDPHSIAERLRREKIAERMKNLQELVPNSNKVDKASMLDEIIEYVKFLQLQVK VLSMSRLGAAGAVIPLLTDGQPEGHNSLSLSPSAGLGIDISPSADQIAFEQEVLKLLESDVTMAMQYLQSKGLCLMPIALAAAISSVKASLSGTTSEERK NNGYTSGLVSSSSSITGIDTHPMSNDNNIATGTLSSKGMIVNGCNEVVKQEVLKNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	0	1
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	2.82	0.8116
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Potri.001G344600 [exp]	3.16	0.7611	PK7.1
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.014G145200 [exp]	4.89	0.7387
AT3G16300			Uncharacterised protein family...		Potri.001G188000 [exp]	7.07	0.7186
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	7.87	0.7975
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	9.89	0.7557
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Potri.005G101600 [exp]	10.19	0.6941
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	10.67	0.7893
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.015G009300 [exp]	13.96	0.7376
AT3G56810			unknown protein		Potri.016G024600 [exp]	17.23	0.7436

Compare expression of checked genes

Potri.006G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.