Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TIF3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33250 382 / 2e-136 ATTIF3K1, EIF3K eukaryotic translation initiation factor 3K (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G063600 [exp] 439 / 8e-159 AT4G33250 371 / 6e-132 eukaryotic translation initiation factor 3K (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039931 [exp] 418 / 2e-150 AT4G33250 367 / 2e-130 eukaryotic translation initiation factor 3K (.1) Lus10027668 [exp] 417 / 3e-150 AT4G33250 363 / 4e-129 eukaryotic translation initiation factor 3K (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF10075 [poplar] [flax] CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence Show only first row Show all	>Potri.006G136500.1 pacid=42767602 polypeptide=Potri.006G136500.1.p locus=Potri.006G136500 ID=Potri.006G136500.1.v4.1 annot-version=v4.1 ATGGGAAGGGAAAGAGAGGTTCCAAATAAATCAGAAAAAGAAGTAATCTCATACACAGTGGAGCAGCTGGTTGCCGTCAATCCCTACAATCCTGACATCC TCCCCGATCTCGAAAACTACGTTAACGAACAGGTTTCGTCGCAAACATACAGCCTAGATGCAAATCTTTGCCTTCTTCGCCTCTATCAGTTTGAGCCGGA GAGAATGAGCACCCAAATTGTGGCTCGCATTCTCGTTAAGGCACTCATGGCAATGCCAGCTCCTGATTTCAGCCTTTGTCTCTTTTTGATTCCGGAGCGA GTGCAAATGGAGGAACAGTTCAAGACACTGATTGTTCTCTCACATTATTTGGAGACAGGAAGGTTCCGTCAATTCTGGGATGAAGCTGCTAAGAGTCGCC ACATAGTTGAAGCTGTACCAGGTTTTGAGCAAGCAATCCAAGCCTATGCAATTCACCTGCTTTCTTTGACTTATCAAAAGGTCCCTAGGTCTGTGCTGGC TGAGGCAATCAACATCGAAGGTCTATCCTTGGACAAGTTCCTAGAACAGCAGGTGGCCAATTGTGGTTGGATATTGGAGAAGAGCCATGGGCGGGGACAA CTCATTGTCCTACCAAGTAATGAATTTAATCATCCTGAGCTTAAGAAGAACACTGCAGATAGCATTCCTTTAGAGCATGTTGCCCGCATCTTCCCCATTC TTGGTTGA
AA sequence Show only first row Show all	>Potri.006G136500.1 pacid=42767602 polypeptide=Potri.006G136500.1.p locus=Potri.006G136500 ID=Potri.006G136500.1.v4.1 annot-version=v4.1 MGREREVPNKSEKEVISYTVEQLVAVNPYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFEPERMSTQIVARILVKALMAMPAPDFSLCLFLIPER VQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQAYAIHLLSLTYQKVPRSVLAEAINIEGLSLDKFLEQQVANCGWILEKSHGRGQ LIVLPSNEFNHPELKKNTADSIPLEHVARIFPILG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Potri.006G136500 [exp]	0	1	TIF3.2
AT3G12390			Nascent polypeptide-associated...		Potri.003G190800 [exp]	4.69	0.9425
AT3G05560			Ribosomal L22e protein family ...		Potri.010G012700 [exp]	6.70	0.9303	RPL22.5
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370000 [exp]	8.36	0.9166
AT1G76400			Ribophorin I (.1)		Potri.002G006600 [exp]	8.83	0.9250
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	10.29	0.9324
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	13.07	0.9141
AT2G03430			Ankyrin repeat family protein ...		Potri.010G161300 [exp]	13.63	0.8853
AT5G56450		PM-ANT	Mitochondrial substrate carrie...		Potri.006G227100 [exp]	13.85	0.8525
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	14.28	0.9148
AT2G39390			Ribosomal L29 family protein ...		Potri.006G214200 [exp]	16.43	0.9290

Compare expression of checked genes

Potri.006G136500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.