Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TES.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43210 1250 / 0 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT1G18370 1092 / 0 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT2G21300 462 / 7e-149 ATP binding microtubule motor family protein (.1.2) AT4G38950 458 / 2e-147 ATP binding microtubule motor family protein (.1.2) AT4G24170 452 / 3e-143 ATP binding microtubule motor family protein (.1) AT5G66310 453 / 4e-143 ATP binding microtubule motor family protein (.1) AT3G51150 452 / 7e-143 ATP binding microtubule motor family protein (.1.2) AT1G59540 293 / 9e-86 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 291 / 1e-82 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 282 / 7e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G054400 [exp] 1111 / 0 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.015G044600 [exp] 1100 / 0 AT1G18370 1518 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 474 / 1e-152 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.007G014800 [exp] 476 / 3e-152 AT5G66310 868 / 0.0 ATP binding microtubule motor family protein (.1) Potri.009G124500 [exp] 474 / 1e-151 AT2G21300 752 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.004G162800 [exp] 473 / 2e-151 AT2G21300 1031 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.005G116900 [exp] 462 / 6e-147 AT3G51150 668 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G013300 [exp] 296 / 1e-86 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G040700 [exp] 291 / 2e-82 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005181 [exp] 1312 / 0 AT3G43210 1189 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Lus10032452 [exp] 1058 / 0 AT1G18370 1452 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10042952 [exp] 835 / 0 AT1G18370 1206 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) Lus10031086 [exp] 469 / 8e-151 AT2G21300 1026 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10035471 [exp] 467 / 7e-150 AT2G21300 1011 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10015448 [exp] 448 / 4e-148 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10010624 [exp] 454 / 2e-144 AT3G51150 577 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 452 / 1e-143 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10025969 [exp] 455 / 4e-143 AT3G51150 694 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10014268 [exp] 454 / 6e-143 AT5G66310 667 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0023 [poplar] [flax] PF11995 [poplar] [flax] DUF3490 Domain of unknown function (DUF3490)
Representative CDS sequence Show only first row Show all	>Potri.006G136600.1 pacid=42767131 polypeptide=Potri.006G136600.1.p locus=Potri.006G136600 ID=Potri.006G136600.1.v4.1 annot-version=v4.1 ATGGTAGGAACACCAGTAACACCAGCATCAAAGATGATACAGAGAACGCCGTCGACAACTCCAGGCGGTGGAACTAGGGTTCGCGAAGAGAAGATTCTAG TTACAGTTAGGGTTCGGCCGCTAAGCAGGAGAGAACAAGCATTGTATGATTTAATTGCTTGGGATTGTCCGGATGATCACACTATTCTTTTCAAGAATCC TAATCAGGAGCGACCTGCTACTTCTTATAAATTTGATAAGGTTTTTGATCCGAGTTGTTCGACGCTCAAGGTTTATGAGGAGGGAGCTAAGAATGTTGCT TTGTCTGCTCTTACCGGAATCAACGCGACAATTTTTGCTTATGGGCAAACTAGTAGTGGGAAGACATATACAATGAGAGGAATCACGGAGAATGCTGTTA CGGACATCTTTGAGCACATAAAAAATACTCAGGAGAGGGTATTTATTCTAAAGGTGTCTGCGTTGGAGATCTACAATGAGAATGTTATAGATCTTTTGAA TCGTGAATCTGGTCACCTTAGGCTTTTGGATGATCCTGAGAGAGGGATCATTGTGGAAAAGCTAGTTGAAGAAGTTGTCAAGGACATTCATCATTTGAGA CACTTGATTGGCATTTGTGAAGCTCAAAGGCAAGTAGGAGAAACTTCTCTGAATGATAAGAGCTCTAGATCACATCAGATAATACGGTTGACTGTCGAAA GCAGTCTCAGGGAAAAATCAGGGTGTGTGAAGTCCTTCCTAGCAAGTTTGAATCTTGTGGACCTTGCTGGTAGTGAGCGTGCCTCACAAACAAATGCTGA TGGTGCAAGATTCAAGGAAGGTAGTCATATTAACCGCAGTTTGTTGACACTCACAACAGTGATCAGAAAACTAAGTGGTGGAAAGAGGAGTGGTCATATA CCATACAGGGACTCAAAGCTCACACGGATATTGCAGCATTCACTTGGGGGTAATGCCAGAACAGCAATTATATGCACCATGAGTCCGGCTTTAAGTCATG TGGAACAAACAAGGAATACACTTTCATTTGCAACTAGTGCAAAGGAAGTTACCAACAATGCCCAAATAAATATGGTTGTTTCAGACAAGAAATTAGTTAA GCATTTGCAGAAGGAAGTGGAAAGACTTGAAGCAGAGCTGCGGAGTCCAGAGCCTTCTTCGGCTTCTTATTTGCAGTCTTTACTAATAGAAAAGAATTTA CAAATTGAGCAGATGGAGAGAGAAATGAAAGAGCTGAAGCGGCAGAGAGACCATGCGCAATCCCAACTTGAAGAAGAAAGAATTGCACGCAAAGAGCAGA AGGGTACAAATCAATGTGGACCCTCTGGACAAGTAGCCAGGTGTCTTTCATTTCCTGTTGAGAGTGGACAGGTTGTTGGTGGTAAGCCTACAGAAGCACA ACAGATGAATGTGGTTGGAAGGCAGGCAATGGTTCGACAGTCAGTCACTTCTACAGATCCTTCCATGCTTGTTCAAGAAATTCGTAAGCTTGAGCAGCGA CAGAGGCAACTGGGTGTGGAAGCGAATCGAGCACTTGAAATACTTCATAAGGAGGTTTCTTCCCACAGACTGGGTAATCAAGCAACTGCTGAAACCATAG CAAATATGCTGTCTGATATCAAGGAAATGCAAGTAGTTTCCACTTTTGCAGGAGAAATTGTAAATGGAGAGAAGGCCAATGCTGCCAGCTTGAAAGAAGA GATCACTCGGTTGAACTCTCATGAATGTACCATTGTGTCTCTAGAAAGGAAGCTTGATAATGTTCAGAAATCCATTGACATGTTGGTTTCCTCTTTTTCA AGTACTGAGGAGACTCCAAACTCCAAGGTCCAATTAAAGAAGAAGATCTTTCCTTTTGCATTGAACAATAGTTCAAGCATGCAAAACATAATAAGGTCCC CATGCTCACCTCTGACCTCTTCTGGTGGGGTAGTGGATAATGAGATTGAGAACAGAGCCCCTGAGAACAGTAATGCATTGTTTTGTAGCAATTCATTAGC CAGGCCATCTGAAGCTACTCCACCGAAGAGTGGTAAAAATGGCAACCGTACTCCTTCAAGGGAGGTAACTCCAGCATCTGGTTCTAATTCGGTAAATGTG AAGAAAATGCAGAGGATGTTCAAGAATGCTGCAGAAGAGAACATACGGAGTATTAGAGCTTATGTTACTGAGTTAAAAGAAAGGGTGGCAAAGTTGCAAT ATCAAAAGCAACTTCTAGTTTGCCAGGTGTTGGAGCTCGAGGCAAATGAGGAAGCAACCACCGAGACAGAAAATATGGACCAGTCTCCCATGCCATGGCA CTTGGTTTTTGATGATCAAAGAAAACAAATTATTATGTTATGGCACTTGTGCCATGTTTCAATCATACATCGTACACAATTTTATTTGTTATTCAGAGGG GAACCTGGTGATCAGATATATCTGGAAGTTGAGCTTAGACGGTTGACATGGTTGGAGCAGCATTTGGCTGAACTTGGCAATGCAAGCCCAGCACTGCTAG GTGATGAACCTGCAAGCTCAGTGTCATCAAGTATCAAAGCTCTGAGACAAGAAAGAGAATATCTTGCTAAGAGGGTGAATTCAAAGCTTACAGTAGATGA AAGAGAAATGCTATATGTGAAATGGGAAATCCCACAAGGAGGGAAACAAAGGAGGCTTCAACTGGTGAACAAATTGTGGACAGACCCTCTTAACATGCAA CACATTAAAGAGAGCGCAGAAATCGTCGCAAAGCTTGTTGGGTTTTGTGAATCCGGTGAACATGTCAGCAAGGAGATGTTTGAGCTAAATTTTGCAAACC CTTGTGATAAGAAGACATGGATGGGGTGGAATTTGATATCTAGCCTTTTAAATCTGTAG
AA sequence Show only first row Show all	>Potri.006G136600.1 pacid=42767131 polypeptide=Potri.006G136600.1.p locus=Potri.006G136600 ID=Potri.006G136600.1.v4.1 annot-version=v4.1 MVGTPVTPASKMIQRTPSTTPGGGTRVREEKILVTVRVRPLSRREQALYDLIAWDCPDDHTILFKNPNQERPATSYKFDKVFDPSCSTLKVYEEGAKNVA LSALTGINATIFAYGQTSSGKTYTMRGITENAVTDIFEHIKNTQERVFILKVSALEIYNENVIDLLNRESGHLRLLDDPERGIIVEKLVEEVVKDIHHLR HLIGICEAQRQVGETSLNDKSSRSHQIIRLTVESSLREKSGCVKSFLASLNLVDLAGSERASQTNADGARFKEGSHINRSLLTLTTVIRKLSGGKRSGHI PYRDSKLTRILQHSLGGNARTAIICTMSPALSHVEQTRNTLSFATSAKEVTNNAQINMVVSDKKLVKHLQKEVERLEAELRSPEPSSASYLQSLLIEKNL QIEQMEREMKELKRQRDHAQSQLEEERIARKEQKGTNQCGPSGQVARCLSFPVESGQVVGGKPTEAQQMNVVGRQAMVRQSVTSTDPSMLVQEIRKLEQR QRQLGVEANRALEILHKEVSSHRLGNQATAETIANMLSDIKEMQVVSTFAGEIVNGEKANAASLKEEITRLNSHECTIVSLERKLDNVQKSIDMLVSSFS STEETPNSKVQLKKKIFPFALNNSSSMQNIIRSPCSPLTSSGGVVDNEIENRAPENSNALFCSNSLARPSEATPPKSGKNGNRTPSREVTPASGSNSVNV KKMQRMFKNAAEENIRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEEATTETENMDQSPMPWHLVFDDQRKQIIMLWHLCHVSIIHRTQFYLLFRG EPGDQIYLEVELRRLTWLEQHLAELGNASPALLGDEPASSVSSSIKALRQEREYLAKRVNSKLTVDEREMLYVKWEIPQGGKQRRLQLVNKLWTDPLNMQ HIKESAEIVAKLVGFCESGEHVSKEMFELNFANPCDKKTWMGWNLISSLLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Potri.006G136600 [exp]	0	1	Pt-TES.1
AT5G41460			Protein of unknown function (D...		Potri.003G131400 [exp]	1.41	0.8730
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	1.41	0.8744	Pt-CYCB2.2
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	7.34	0.8618
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Potri.015G132400 [exp]	18.89	0.8256
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	21.90	0.8479
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.003G131925 [exp]	27.34	0.8594
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	32.09	0.8484
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.002G199600 [exp]	33.98	0.8034
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.011G131200 [exp]	34.35	0.7813
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	34.58	0.8166

Compare expression of checked genes

Potri.006G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.