Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SUS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43190 1375 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 1340 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT4G02280 1132 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 1114 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT1G73370 889 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 837 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G10120 155 / 2e-38 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 147 / 6e-36 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 137 / 8e-33 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G20280 124 / 9e-29 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G063500 [exp] 1496 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.002G202300 [exp] 1137 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.015G029100 [exp] 909 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 908 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 893 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 891 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.013G095500 [exp] 143 / 6e-35 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.018G025100 [exp] 142 / 1e-34 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 139 / 1e-33 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020506 [exp] 1378 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 1331 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10001468 [exp] 1091 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10010308 [exp] 1041 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10020791 [exp] 859 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 852 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 808 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 768 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10013417 [exp] 600 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 375 / 2e-123 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF00862 [poplar] [flax] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Potri.006G136700.3 pacid=42768316 polypeptide=Potri.006G136700.3.p locus=Potri.006G136700 ID=Potri.006G136700.3.v4.1 annot-version=v4.1 ATGTCTGTACTTACTCGTGTCCAAAGCATTCGTGAACGTTTGGATGAGACCCTCAAGACTCATCGCAACGAGATTGTTGCCTTACTGACCAGGATTGAAG GCAAGGGAAAAGGAATTCTTCAACACCACCAGATTATTGCTGAGTTTGAAGCAATCCCTGAAGAGATCAGGAAGATATTGGCGGGTGGTGCTTTTTCTGA AGTTCTCAGATCCACACAGGAAGCAATTGTTTTGCCTCCATGGGTTGCCCTTGCTGTGCGCCCAAGGCCTGGTGTCTGGGAGTACGTCAGAGTGAATGTC CAAGCACTTGTTGTTGAGGAGTTGCGTGTTGCTGAGTATCTTCATTTCAAGGAGGAACTTGTTGATGGAGGCTCCAATGGCAACTTCGTGCTTGAATTGG ACTTTGAACCATTCAGTGCATCTTTCCCTCGCCCAACTCTTTCGAAGTACATTGGTAACGGTGTTGAGTTCCTCAACCGCCACCTTTCAGCTAAGTTGTT CCATGACAAGGAAAGCCTGCACCCCCTGCTTGCATTTCTCAAGGTGCACTGTCACAAGGGGAAGAATATGATGCTGAATGACAGAATTCATAACCTAGAC TCTCTGCAATATGTTCTGAGGAAGGCCGAGGAATATCTGTCTTCTCTGAAACCTGAGACTCCATACTCTCAATTCGAACACAAGTTCCAGGAGATCGGCT TAGAGAGAGGATGGGGCAATACTGCTGAGCGTGTTCTTCAGATGATTCAACTTCTTTTGGATCTTCTTGAGGCACCAGATCCCTGCACTCTTGAAACTTT CCTTGGCAGAATTCCTATGGTCTTCAATGTTGTGATCATGTCCCCTCATGGATACTTCGCCCAAGACAATGTTTTGGGGTATCCTGATACCGGAGGCCAG GTTGTTTACATTTTGGATCAAGTTCGTGCCTTGGAGAGTGAAATGCTTCTGCGTATCAAGCAGCAAGGACTTGATATCACCCCCCGAATTCTCATTATTA CTCGACTGCTCCCTGATGCAGTAGGAACCACTTGTGGACAACGTCTGGAGAAAGTCTATGGATCGGAGCATTGTGATATTCTTCGAGTTCCCTTCAGAGA TGAAAAGGGAATGGTCCGGAAATGGATCTCTCGCTTTGAAGTTTGGCCATACCTAGAAACTTTCACTGAGGATGTTGCTGCTGAAATTGCTAAGGAGTTG CAGGGAAAGCCTGATCTGATCATTGGAAATTACAGTGATGGAAACGTTGTTGCCTCCTTGCTAGCACACAAATTAGGTGTTACAGAGTGCACTATTGCAC ATGCTCTAGAAAAAACAAAGTACCCAGATTCAGATATTTACTGGAAGAAGTTTGATGAAAAGTACCACTTTTCATGCCAGTTTACAGCTGATCTTTTTGC CATGAACCATACAGATTTCATCATCACCAGCACATTCCAAGAGATTGCTGGAAGCAAGGATACTGTTGGACAGTACGAGAGCCACACTGCTTTCACTCTC CCTGGCCTCTACAGAGTTGTTCATGGTATCGATGTATTTGATCCCAAATTCAACATTGTATCCCCTGGTGCTGACGAGAGCATATACTTCCCTTACACTG AGAAGAAACTTAGGTTGACTTCTTTCCATGAAGAAATTGAAGAACTTCTTTACAGCTCCGTTGAGAACGACGAGCACTTATGTGTGCTAAAAGACCGCAA CAAGCCAATTCTATTCACCATGGCGAGGCTGGACAGAGTTAAGAATTTAACTGGTCTTGTAGAATGGTATGGAAAGAATACCAAGCTGCGCGAATTAGCT AATCTTGTTGTAGTTGGTGGTGATAGAAGAAAGGAGTCTAAAGATATAGAAGAGCAAGCTGAGATGAAGAAAATGTACAGTCATATAGAGAAATACAAAT TGAATGGCCAGTTCAGATGGATTTCTTCTCAGATGAACCGCGTGAGGAATGGAGAGCTCTACCGATACATTTGTGATACCAAGGGAGCTTTCGTGCAGCC TGCTTTGTATGAGGCTTTTGGATTGACTGTTGTTGAGGCCATGACATGTGGTTTGCCAACCTTTGCTACTTGCAATGGTGGTCCTGCTGAGATCATTGTG CATGGAAAATCCGGATTCCATATTGATCCTTACCACGGAGTACAGGCTGCTGAACTCCTTGTTGACTTCTTTGAGAAGTGCAAGGCTGATCCCAGTTACT GGGACAAAATCTCCCAGGGAGGCCTGCAGCGAATCCAAGAGAAGTATACCTGGAAAATTTACTCTCAAAGGCTCCTGACTCTCACAGGAGTTTATGGCTT CTGGAAGCATGTTTCCAACCTTGATCATCGTGAGAGCCGTCGCTATCTGGAAATGTTCTATGCACTCAAATATCGCAAATTGGCTGATTCTGTTCCTTTG ACTATCGAGTAA
AA sequence Show only first row Show all	>Potri.006G136700.3 pacid=42768316 polypeptide=Potri.006G136700.3.p locus=Potri.006G136700 ID=Potri.006G136700.3.v4.1 annot-version=v4.1 MSVLTRVQSIRERLDETLKTHRNEIVALLTRIEGKGKGILQHHQIIAEFEAIPEEIRKILAGGAFSEVLRSTQEAIVLPPWVALAVRPRPGVWEYVRVNV QALVVEELRVAEYLHFKEELVDGGSNGNFVLELDFEPFSASFPRPTLSKYIGNGVEFLNRHLSAKLFHDKESLHPLLAFLKVHCHKGKNMMLNDRIHNLD SLQYVLRKAEEYLSSLKPETPYSQFEHKFQEIGLERGWGNTAERVLQMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVIMSPHGYFAQDNVLGYPDTGGQ VVYILDQVRALESEMLLRIKQQGLDITPRILIITRLLPDAVGTTCGQRLEKVYGSEHCDILRVPFRDEKGMVRKWISRFEVWPYLETFTEDVAAEIAKEL QGKPDLIIGNYSDGNVVASLLAHKLGVTECTIAHALEKTKYPDSDIYWKKFDEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTL PGLYRVVHGIDVFDPKFNIVSPGADESIYFPYTEKKLRLTSFHEEIEELLYSSVENDEHLCVLKDRNKPILFTMARLDRVKNLTGLVEWYGKNTKLRELA NLVVVGGDRRKESKDIEEQAEMKKMYSHIEKYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCNGGPAEIIV HGKSGFHIDPYHGVQAAELLVDFFEKCKADPSYWDKISQGGLQRIQEKYTWKIYSQRLLTLTGVYGFWKHVSNLDHRESRRYLEMFYALKYRKLADSVPL TIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	0	1	Pt-SUS1.1
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	1.00	0.9755
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272800 [exp]	2.00	0.9558
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	2.00	0.9639
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G306200 [exp]	2.23	0.9541
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.004G190900 [exp]	4.24	0.9473
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	4.24	0.9594
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	4.89	0.9483
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.019G036000 [exp]	6.00	0.9434	TUA8,TUA1.1
AT2G16400	HD	BLH7	BEL1-like homeodomain 7 (.1)		Potri.002G031000 [exp]	6.48	0.9309
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	6.92	0.9508

Compare expression of checked genes

Potri.006G136700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.