Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03140 1356 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G50790 137 / 3e-34 esterase/lipase/thioesterase family protein (.1) AT1G34340 112 / 3e-25 alpha/beta-Hydrolases superfamily protein (.1) AT5G49950 106 / 3e-23 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G146500 [exp] 153 / 1e-39 AT3G50790 512 / 0.0 esterase/lipase/thioesterase family protein (.1) Potri.013G115000 [exp] 106 / 3e-23 AT1G34340 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G223100 [exp] 101 / 1e-21 AT5G49950 648 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033426 [exp] 1493 / 0 AT2G03140 1245 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034894 [exp] 882 / 0 AT2G03140 697 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001673 [exp] 135 / 2e-33 AT3G50790 536 / 0.0 esterase/lipase/thioesterase family protein (.1) Lus10017332 [exp] 115 / 1e-26 AT3G50790 431 / 9e-150 esterase/lipase/thioesterase family protein (.1) Lus10035744 [exp] 111 / 1e-24 AT5G49950 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037322 [exp] 109 / 3e-24 AT5G49950 632 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035739 [exp] 108 / 1e-23 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037325 [exp] 106 / 5e-23 AT5G49950 627 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036590 [exp] 102 / 1e-21 AT5G49950 638 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035807 [exp] 55 / 3e-07 AT5G49950 283 / 6e-92 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [poplar] [flax] Peptidase_U PF02517 [poplar] [flax] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Potri.006G136900.2 pacid=42769558 polypeptide=Potri.006G136900.2.p locus=Potri.006G136900 ID=Potri.006G136900.2.v4.1 annot-version=v4.1 ATGAACACCAATCTCCACCACCTTAAACCACAGCTCCTAAATCCACACCCCTTTTTCTCCCCTAAAAACCCTTACCAATTCCGTTCTTACAAACGACGCC GTCTTAAACCATGTAGCAGCAGCAGCAACTTCCTAGAACCTTTCAAGAACCTTCTATCACAATTCCCGTCACCAAACACTCCCGATATCTTGGCTCCTGC TTTAGGCCTCGCTTCAGGCTTAACTCTCTATCTCTCTCAATCAAACAAATTTTCAAAATCCTCAAACATCGGCGAGTGGATTCTTTTTTCTAGCCCGACG CCGTTTAACCGTTTTGTAATTTTACGCTGCCCTTCAATATCGTTCGAAGGGAGCGAGTTTATAGAAAATGTGAACGATAAGTTAGTTAAAGAGGACAGGC ATTTTGTTAGGTTAAATAGCGGGAAAATTGGGGTGGGGAGAGAGAGTAGTGAGGGATTGAAATTGGAGTTTCAAAGAGTGTGTGTTAATACGGAGGATGG TGGTGTTATTTCGCTTGATTGGCCGGCGGATTTGGAGTTGGAAGAAGAACATGGATTGGATACTACTTTGTTACTTGTTCCTGGCACTGCCAAAGGCAGT TCGGAAGACAATGTTAGGTTTTTTGTCGTTGATGCTCTTAAGCGCGGCTTTTTCCCTGTCGTTATGAATCCTAGAGGATGTGCTGCTTCACCAATTACTA CGGCAAGGTTATTTACAGCTGCTGACAGCGATGATATCTCCACAGCTATACAGTTCATCAGCAAGGCAAGGCCATGGACGACACTAATGGGTGTTGGATG GGGATATGGTGCGAATATGTTGACAAAATATTTGGCTGAAGTTGGGGAGTGTACACCTCTCACTGCCGCCACGTGCATTAACAATCCTTTTGACTTAGAG GAGGCCACGAGGTGCTCTCCTTATCACGTAGCATTGGATCAGAAGCTCACTGGTGGACTGATAGATATTCTGCAATCTAACAAGGAAATTTTTCAAGGAA GAGCAAAGGGGTTTGATGTGGAAAATGCTTTAGTGTCAAAATCTGTTCGTGATTTTGAAAAAGCAATATCTATGGTATCTTATGGCTTTGAGGAAATAGA AGACTTCTATTCAAAATCTAGCACACGAGGCATGGTTGGGAATGTCAAGATTCCAGTTCTTTTTATCCAGAGTGATGATGGGACAGTGCCGCCGTTCTCC ATTCCACACAGTTTGATTGCTGAAAATCCATTTACAAGCCTCCTTTTATGTTCTTGTGTGCCATCTAGTGCTGTAGAAAGTGGCAGAGCTGCTGTATCAT GGTGCCAGAATCTTACAATTGAGTGGCTTATAGCTGTGGAGCTTGGACTTTTGAAGGGTCGTCATCCACTTCTGAAAGATGTAGACGTTAACATCAACCC CTCAAAAGGCCTAACTCCTGTGGAAAGCAGAGATAAACGAGTTGAACTTAATAATCTCTCAAGTCTTTCCCCAACTGACACTAGTGGGTACACCATAGAA CCTATAAACAAGATACTTCAAGATATCCAATCAAGATCCAGAAAAGATTCCCAAAGAGATTTAAAACTCGATGAAGAACTGCAAGGAGTGGAAAATGATG CAGTGCAGCAGAGAAGATCTGTTGATGCTGAATTGATAGAACAGGATTCTGCAGATTCTGTAGATATTGAAAATGGTCAAGTGCTGCCAACAGCTCAGGT GGTTATGAATATGCTTGATGTGATGATGCCTGATACTCTGACCAAAGAAAAAAAGAAGAAGGTTTTGACTGCTGTGGGTCAGGGAGAGACACTTATTAAA GCTTTGCAAGATGCTGTACCAGAAGAGGTTGTTGGAAAGCTTACGACTTCTGTATCTGGAATTCTGCAAGCTCAACACAGTAACTTAAATGCTAATGGAC TACTGAGCATTGGTGAGGTTCCTAATGTTCCTAAAACAAAGATACAGGAAAAAGTCAGAGAAGTATCAAGTGCAGAAGTCACATCTAAAGATCCACATTC TCCAGATCAGATGGAAAGGGCTGAGGATTTGACAGATGGATCTGTTAACAATCATCCTGGGACAGAGAAGTCTGGTGCTGCACCTGAACAGGAGCTTCAC TCTTCGAAGAATATACAAAAATCTATTGAAACAAGTCAGTCTCAGGTAATGAGCAGTCAACAAGGTGATCCATCTGGGTCTGACAGGAAGGAACCAAATG AGTCGGGACATAAGAATGAGAGTGATGAGTTTATCAAAGAAAAAGCTGCATCTCACTCTGACAGTAGTGAGAAGGGATTGGAAACCAGCAGTAACCCTAA CATCACCAGCCATTCTGAGAAGGCTAGTAGCACGGAAGAAGCAATTGTTGATGAATCCAAAGTTGAACAGGGTGGTGGATCACCTCAAGTAGAAGCAAAA GGGGAGAATAGCACTCAGAAGAATGAAGAGAAAACTGCAGATTCATCAGCTGATCAAAATGGGATAGTTTCAGCCAAAATGACAGAAGAACCTCTTCTAC CTGCAGTATCTGCCACTGACTCTCAAACAATTGAAAGGGGTGGAAATGATGATCAGAAAAATGAAGAGAAAACTGCAGATTCATCAGCTGATCAAAATGG GATAGTTTCAGCCAATATGACAGAAGAACCTCTTCCACCTGCAGTATCTGCTACTGACTCAGAAGCAATTGAAAGGGTTGGAAATGGTGATCAGAAGAGG GAAAACAAAACCATGCAACCTGCTCATGATCAAAATAAGCCTCCCACATCTGATTCTAATCCCCCTACTTTCAGCGTTACTCAAGCATTAGATGCCTTAA CAGGGATGGATGATTCTACTCAAGTGGCTGTTAACAGTGTTTTTGGTGTGCTAGAAAGCATGATTTCTCAGTTGGAAGAGGAAACAGACCATGAAAACAA AATCAAGAATAAAAATGAGGTTGAGGGTGAGTTAGTTGATTCCAAGCCTAAGAAACTGGAAAACGCTAATCACTCAGGCAAGCAGTCAGACACATTACAG CATCCTCCTGTACATAAGCTCCATGAAAGTGGTGGCAACCAACAGAATGTTGCAAGTAGTGGATTGGTAGAGGAGGAACTCACTGAGGATCCCATTTTGT TTAGTGGGAATGGTACTAGGGGTTCTCAGGGAGATATTGCGAGCAACTATGAAATTAAGGAAGAACAAAAGAAGGATCAATTAGTTAGTGGGAAGCATTT GGCTGGCTATGATGGACATGTAAATAGCATTCCATTGTACGTAACTGCAAATCCATATGGAGACTTTGTACAGAACAAATATTTCCACAGATATCTTCTT TCAAAGATTCCAAATAGCAAGCCACTTGATCTAGATACAACCACTGCTCTGTTGCTTGACTATTTTCCAGAAGAAGGTAAATGGAAGCTCCTAGAGCAGC CAGGAATCACTGGAGAATCTATAGGAGGTGTTACCACCAGTAATGATGCTGGCATAAAGGTTCAGGTCCACTCCTCTGGAAAAGAGAATGATGGAGAAAG TTATATTGAACCATCATATGTAGTATTAGATACTGAAAAGCAACAGGAACCTGTTGAAGAATATAGCACAATGGAAATTTTTACTGAAAATGATGATGGT ATATTAGATGAGTTAATAGAGTTTGTGAAAATTGTTGTTTTGGATGCTTTGAGGATTGAAGTTGGTCGCAAACTAGGTGCAGCTAGCAAGAAAGAAATGA AATCCTATTTTGCTAGAGATCTTGAGCTAGTAGCAGATGCTGTGTCTCTGGCCATTGTACGTAACAAGGATCATACTTGGTGCTTGAAAGGTAAATATCA TAGAATTGAAGGTGCTGAAGAAAAAGTTGGTACTGTTCATGGAGAGCATATTGTCAAGGCCATTTCATCTTCTGTTCTTAGAACAAATTATCTGAGAAGA TTACTGCCAGTTGGTGTCATTATAGGGTCTAGCTTAGCTGCTTTGAGAAAATATTTTAATGTAGCTACAAGGAACGAGAATGACATAAAATCCTCAGGTC AAACCCAAAATCATGGGCAGAAAAGTCAAGACAAGGTCTGCATAAAGGAGATGGATCATGAGCTTACAACCAAAAGTGGTCATAGAACAAGTTTCAACAG TTCAATAACTAGAGAAGGAGAAGAAGCAACATTGAAAACTATAAACAATGATAGAGTGATGGTTGGTGCTGTTACAGCTGCCTTGGGAGCGTCTGCTTTA CTAGTTCAGCAGCAGGATCCAAGCAATTCCAAGGAAGGTGGGGAAAGTTCATCCAAGTTCTTGAAGGAAAGAGGAAATCTTCTAAAGCCAGCTGAAAAGC TGGAGGTAACGGAGTCTGAAAAAAACCCGAACATTGTTACGAGCCTTGCTGAGAAGGCCATGTCCGTTGCTGGTCCGGTGGTTCCTACGAGGGAAGATGG TGGAGTAGATCAAGAAAGGCTGGTTGCAATGTTAGCTGACTTGGGACAAAAGGGTGGCATGTTGAAGCTAGTTGGTAAAATTGCTTTGCTTTGGGGTGGT ATACGTGGTGCTATGAGTCTGACAGACAAACTGATTATGTTTCTGCATATAGCTGAACGCCCCTTGTACCAGAGGGTTCTTGGGTTTGCTGGCATGGTGC TTGTTCTTTGGTCACCGATCATTGTTCCATTGCTTCCCACTCTTGTACTGAGCTGGACAACGAGCAACCCCTCCAGATTTGCTGAGTTTGTTTGCATTGT TGGCCTCTATACTGCTATTATGATACTTGTTACGTTATGGGGCAGAAGAATACGTGGATATGAAGATCCACTAGAGCAATACGGGTTAGATTTGACTGCA TTGCCTAAGATCCAAAAATATTTGTGGGGCTTGATTGGAGGAGTCCTGCTTGTTGCATCAATACAGTCCCTAAATGCTTTACTGGTTTGTGTGAGTTTCT CTTGGCCGTCAGGCATTCCTTCATCTTCCTTAGATGCCATGACATGGCTCAAAATGTATGTGCAAATGATTATGCTAGCTGGTCGAGGAATTATAACGGC AACAGGCATTGTGCTGGTTGAAGAATTACTTTTCAGGTCATGGTTGCCTGAAGAAATTGAAGCAGATGTTGGCTATCATCAAGCAATTATTATTTCAGGA CTGGCATTCTCTCTTTTCCAGAGGTCTGTCTGGGCAGTGCCAGGGCTTTGGCTTTTTTCCTTGGCTCTTGCAGGGTTTCGGCAAAGAAGCAAAGGCAGCC TGTCCATTCCAATCGGGTTGAGGACGGGGATAATGGCTTCTAGTTTTGTTTTACAAACAGGAGGCCTTTTGACCTATAAGCCCAACTATCCTGTTTGGGT AACTGGGACTCATCCACTACAACCTTTCAGTGGGGCAATTGGTCTTGCATTCTCTTTATTGATGGCCATATTTCTCTATCCATGGCAACCTCTAGAAGAG AAGAGCTTGGGAAGGGCCACGCAGGGATGA
AA sequence Show only first row Show all	>Potri.006G136900.2 pacid=42769558 polypeptide=Potri.006G136900.2.p locus=Potri.006G136900 ID=Potri.006G136900.2.v4.1 annot-version=v4.1 MNTNLHHLKPQLLNPHPFFSPKNPYQFRSYKRRRLKPCSSSSNFLEPFKNLLSQFPSPNTPDILAPALGLASGLTLYLSQSNKFSKSSNIGEWILFSSPT PFNRFVILRCPSISFEGSEFIENVNDKLVKEDRHFVRLNSGKIGVGRESSEGLKLEFQRVCVNTEDGGVISLDWPADLELEEEHGLDTTLLLVPGTAKGS SEDNVRFFVVDALKRGFFPVVMNPRGCAASPITTARLFTAADSDDISTAIQFISKARPWTTLMGVGWGYGANMLTKYLAEVGECTPLTAATCINNPFDLE EATRCSPYHVALDQKLTGGLIDILQSNKEIFQGRAKGFDVENALVSKSVRDFEKAISMVSYGFEEIEDFYSKSSTRGMVGNVKIPVLFIQSDDGTVPPFS IPHSLIAENPFTSLLLCSCVPSSAVESGRAAVSWCQNLTIEWLIAVELGLLKGRHPLLKDVDVNINPSKGLTPVESRDKRVELNNLSSLSPTDTSGYTIE PINKILQDIQSRSRKDSQRDLKLDEELQGVENDAVQQRRSVDAELIEQDSADSVDIENGQVLPTAQVVMNMLDVMMPDTLTKEKKKKVLTAVGQGETLIK ALQDAVPEEVVGKLTTSVSGILQAQHSNLNANGLLSIGEVPNVPKTKIQEKVREVSSAEVTSKDPHSPDQMERAEDLTDGSVNNHPGTEKSGAAPEQELH SSKNIQKSIETSQSQVMSSQQGDPSGSDRKEPNESGHKNESDEFIKEKAASHSDSSEKGLETSSNPNITSHSEKASSTEEAIVDESKVEQGGGSPQVEAK GENSTQKNEEKTADSSADQNGIVSAKMTEEPLLPAVSATDSQTIERGGNDDQKNEEKTADSSADQNGIVSANMTEEPLPPAVSATDSEAIERVGNGDQKR ENKTMQPAHDQNKPPTSDSNPPTFSVTQALDALTGMDDSTQVAVNSVFGVLESMISQLEEETDHENKIKNKNEVEGELVDSKPKKLENANHSGKQSDTLQ HPPVHKLHESGGNQQNVASSGLVEEELTEDPILFSGNGTRGSQGDIASNYEIKEEQKKDQLVSGKHLAGYDGHVNSIPLYVTANPYGDFVQNKYFHRYLL SKIPNSKPLDLDTTTALLLDYFPEEGKWKLLEQPGITGESIGGVTTSNDAGIKVQVHSSGKENDGESYIEPSYVVLDTEKQQEPVEEYSTMEIFTENDDG ILDELIEFVKIVVLDALRIEVGRKLGAASKKEMKSYFARDLELVADAVSLAIVRNKDHTWCLKGKYHRIEGAEEKVGTVHGEHIVKAISSSVLRTNYLRR LLPVGVIIGSSLAALRKYFNVATRNENDIKSSGQTQNHGQKSQDKVCIKEMDHELTTKSGHRTSFNSSITREGEEATLKTINNDRVMVGAVTAALGASAL LVQQQDPSNSKEGGESSSKFLKERGNLLKPAEKLEVTESEKNPNIVTSLAEKAMSVAGPVVPTREDGGVDQERLVAMLADLGQKGGMLKLVGKIALLWGG IRGAMSLTDKLIMFLHIAERPLYQRVLGFAGMVLVLWSPIIVPLLPTLVLSWTTSNPSRFAEFVCIVGLYTAIMILVTLWGRRIRGYEDPLEQYGLDLTA LPKIQKYLWGLIGGVLLVASIQSLNALLVCVSFSWPSGIPSSSLDAMTWLKMYVQMIMLAGRGIITATGIVLVEELLFRSWLPEEIEADVGYHQAIIISG LAFSLFQRSVWAVPGLWLFSLALAGFRQRSKGSLSIPIGLRTGIMASSFVLQTGGLLTYKPNYPVWVTGTHPLQPFSGAIGLAFSLLMAIFLYPWQPLEE KSLGRATQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	0	1
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.009G160100 [exp]	1.00	0.8872
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	5.83	0.8735
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.001G122501 [exp]	6.16	0.8543
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	7.00	0.8672
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	7.48	0.8665
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	7.74	0.8716	APG9.1
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	8.00	0.8583
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	8.36	0.8701
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.017G073900 [exp]	8.66	0.8584
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	9.16	0.8590

Compare expression of checked genes

Potri.006G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.