Plant FIBer expression Database

Potri.006G137401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19240 55 / 3e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034891
[exp]
73 / 3e-18 AT1G19240 79 / 2e-20 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G137401.1 pacid=42770227 polypeptide=Potri.006G137401.1.p locus=Potri.006G137401 ID=Potri.006G137401.1.v4.1 annot-version=v4.1
ATGGAGGGATTACTGAAATTTGTACGTCAGGACACGAAGCCAGGGGCTTCCTTGTCTGGTAATTCTTACAACTTAAGCGAAAAGGCTGGATTAACTGCAG
CTTTATCTCCCCCGGACCAGTCTCGTGTTTTGATCACCAGGCCTCCCAGGCAAATGGTTTCTCTGTGGACTTGCTCAAAGATGTGTGCAATTTTCTTTGT
TGCTGGAATTGTTGTTGGGTACACGCTGAAGAAACGTGTTAGGAGATGGGCTGCTAAGCTTCTTAGGAGGTTGAAAGATGACTGA
AA sequence
>Potri.006G137401.1 pacid=42770227 polypeptide=Potri.006G137401.1.p locus=Potri.006G137401 ID=Potri.006G137401.1.v4.1 annot-version=v4.1
MEGLLKFVRQDTKPGASLSGNSYNLSEKAGLTAALSPPDQSRVLITRPPRQMVSLWTCSKMCAIFFVAGIVVGYTLKKRVRRWAAKLLRRLKDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G19240 unknown protein Potri.006G137401
[exp]
0 1
AT4G24500 hydroxyproline-rich glycoprote... Potri.005G153300
[exp]
16.30 0.8608
AT5G65880 unknown protein Potri.007G006700
[exp]
17.14 0.8161
AT5G54180 PTAC15 plastid transcriptionally acti... Potri.015G005200
[exp]
23.45 0.8341
AT3G54826 Zim17-type zinc finger protein... Potri.008G037300
[exp]
27.29 0.8476
AT2G39440 unknown protein Potri.012G120220
[exp]
27.71 0.8475
AT5G17460 unknown protein Potri.004G091600
[exp]
30.46 0.8478
AT5G64830 programmed cell death 2 C-term... Potri.007G080500
[exp]
33.13 0.7717
AT1G03330 Small nuclear ribonucleoprotei... Potri.004G219000
[exp]
46.63 0.7771
AT1G69588 CLE45 CLAVATA3/ESR-RELATED 45 (.1) Potri.010G169300
[exp]
56.94 0.7933
AT5G26110 Protein kinase superfamily pro... Potri.005G212800
[exp]
60.79 0.8138

Potri.006G137401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.