Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34357 1301 / 0 ARM repeat superfamily protein (.1) AT4G23540 345 / 4e-100 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050000 [exp] 379 / 7e-112 AT4G23540 927 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021944 [exp] 1496 / 0 AT2G34357 1194 / 0.0 ARM repeat superfamily protein (.1) Lus10041231 [exp] 811 / 0 AT2G34357 683 / 0.0 ARM repeat superfamily protein (.1) Lus10041232 [exp] 328 / 6e-104 AT2G34357 293 / 1e-91 ARM repeat superfamily protein (.1) Lus10031065 [exp] 318 / 2e-90 AT4G23540 843 / 0.0 ARM repeat superfamily protein (.1) Lus10035446 [exp] 317 / 4e-90 AT4G23540 835 / 0.0 ARM repeat superfamily protein (.1) Lus10041233 [exp] 171 / 2e-48 AT2G34357 81 / 6e-18 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08161 [poplar] [flax] NUC173 NUC173 domain
Representative CDS sequence Show only first row Show all	>Potri.006G137900.3 pacid=42767524 polypeptide=Potri.006G137900.3.p locus=Potri.006G137900 ID=Potri.006G137900.3.v4.1 annot-version=v4.1 ATGGAAGGCATCGAACTTGATGCCCCGTCACTCTCCTTCCCTGAGAATGATTTCTGCGACTCAATTCTCTCACGCTACTCCACCTCCACCCAAGACGACC ACCACCACCTCTGCGCCATAATCGGCACCATGTCACAAGAACTCAAAGACCAAAACCTCCCTTGCACACCTATCGCTTACTTCGGCGCCGCATGCTCCTC CCTAGACCGCCTCTCCTCCTCCTACTCTGATCCTTCCCCTTACGTGATCGATTCTCTTATTACCATCCTCTCTCTAGCTCTTCCTCGAATTTCAATTCCA ATATTGAAGAAAAAAAGAGAACTGGTTTCCAATGTTGTTGTGCGGGTTTTGAAATTAAATTATTCTGTTACAGCTGGAGCTGTTGTTTCGGGATTGAAAT GCGTGGCTCATTTGTTGAGTATCAGAGATAGTTTTAATTGGGATGATATTTCTCAATTATTCGGAGTCTTATTAAGTTTCATGACCGATTCTCGCATAAA GGTGAGAAGGCAATCCCACTCTTGTATCCGTGACACCTTGCTAAATTTTCAAGGTACACCAGCATTAGCTCCGGCGAGTGAAGCAATCACCAATTCTTTC GAAAAGTTTCTTCTTCTTGCCGGTGGATCCAATGCAGTAGCTTCTACTGATGGGCCTAAAGGAGCCCAACACGTTCTATATATTCTCGATGCCTTAAAAG AATGTCTTCCTCTTTTATCATTCAAGTGTGTGACTGCAATTCTCAAGTACTTTAAAACTCTCCTCGAGCTGCGGCAACCTGTTGTTACTAGGCGTGTGAC TGATAGTTTGAAAGTAATTTGCTTACACCCGGGTTTACAGGTTCCGGCTGAACCATTACTCGACTTGCTATGTTCACTAGCTCTTTATGCTTCTACAAAT GAGACGTCTGCGGATAACATGACATTCACTGCCAGCTTGTTGGATGTTGGAATGAAAAAAGTTTATTCCTTAAATAGGCAAATTTGCGTTGTTAAGCTAC CAATTGTATTCAGTACACTCAAAGATATTTTGGCGTCTGAACATGAGGAGGCCATCTTTGCGGCCACACAGGCATTGAAGAACTCAATAAATAGTTGTAT TGATGAAAGCTTGATCAAGCAGGGAGTAGATCAGATTACAATCAACAAAAATGCCGAAACTAGAAAGTGTGGGCCTACAGTTATAGAAAAAGTGTGCGCA ATCATTGAAAGCTTACTTGATTATCATTACAGTGCAGTCTGGGACATGGTATTTCAAGTGGTTTCGACCTTGTTTGATAAATTAGGAAACTATTCTTCTT ATTTTATGAGAGGAACCCTTAAGAACTTGGCAGATATGCAGAGATTACCCGATGAAGATTTTCCTTACCGGAAACAGTTGCACGAATCCCTTGGATCTGC TCTTGGTGCAATGGGTCCTGAGACATTTTTAAGCTTCCTACCTCTTAAATTAGAGGTCGATGACCTATCTGAAGTTAATGTTTGGCTCTTTCCTATTCTG AAGCAGTATACTGTTGGTGCCCGTTTAAGCTTTTTTACAGAGTCAGTTCTGAGTATGGTTGGCCTGATAAAGAAAAAATCTCGACAGCTGGAGCTAGATG GAAGGATCATCTCAGCGAGGAGTGCTGATGCTCTTGTATACTCTTTGTGGTCCTTATTACCTTCCTTTTGCAACTATCCTTTGGATACTGCAGAAAGTTT CCAGGATCTGGAGAAAGCTTTGTGTGGTGCACTTAGTGAAGAATGTGATATTCGTGGAATAGTTTGTTCTGCCCTGCAGGTCCTTATTCAACAGAATAAG AGAATAATGGAGGAGCAAGATGATCTAACTGTTACAGAAGTTGGTATAGCTGAACAGCATGCTATTGCCCGCTATACCCTGCAGGTTGCAACAGATAATT TGAGGGTGCTTAGGTCTTCTGCTCGTAACTTGTTGACTGTTTTGTCTGGGATCCTCCTGGAATCTCCAAAAGATGACGGTGGTCTTCTGCAGTCTACAAT TCGTGAGTTTTCCTCAATAGCAGATAAAGAAGTAGTTAAGAGGATCTACTTAAAGACAATGCAGAAGCTTTTGGCTGTCACACAAAAGGCCACAAAAGCT GATAATTCTAGAGATTCCATTTCTATGCGGATTGATGATTCATCAAATGACTCGAGAGCACGGCTATTTGACCTGGCAATTTCACTTTTGCCAGGATTGG ATGGTGAACAGATCAATGTTTTATATAGTGCAGTAAAGCCTGCATTACAGGATATGGAAGGTCTGATCCAAAAGAGGGCATACAAAGTTCTTTCAATTAT TCTCCAGAGGTACGATGGATTTATTACACCACGATTTGGGGAACTGCTTCAGCTCATGATTGATGTGCTACCCTCATGCCATTTCTCTGCCAAACGGCAC AGACTTGATTGTATTTACTGTCTAATAGTTCATATCCCCAAGGTTGACTCAGAGCAGAGGAGGCATGAAATCCTTACTTCTTTCCTTACTGAGATAATAC TTGCTCTGAAAGAGGTTAACAAAAGAACAAGAAATAGAGCTTACGATGTGCTTGTCCAAATTGGTCATACCTTTGGAGATGAAGAGAATGGCGGAAAGAA AGAAAACTTGTATCAATTTTTTAACATGGTTGCTGGAGGCCTGGCTCTTGAAAGTCCTCATATGATCAGTGCAGCAATGAAAGGTGTAGCTCGTCTGGCA TACGAGTTTTCAGACCTGGTTTCTATTGCTTACAAGTTGCTTCCATCCACATTTCTCCTTCTGCAGAGAAAGAACAGGGAGATTATCAAAGCTAATTTAG GTTTGTTGAAGGTACTAGTGGCCAAATCACAAGCTGAAGGGCTGCAAATGTTCCTGGGGAGTGTGGTGGAAGGCTTGCTGAGATGGCAAGATGACACCAA AAACCACTTCAAAGCTAAGGTTAAGCATATCCTGGAAATGCTAGTCAAGAAATGTGGTCTGGATGCTGTGAAGGCAGTGATGCCTGAAGAACATATGAAA CTCCTTACTAACATACGGAAGATAAAGGAGCGGGGAGAGAGGAAGCATGCAGCAAGCTCTGATGAAACTAAATCTCATATGTCAAGAGCTACTACATCCA GGATAAGCAGATGGAACCATACTAAGATCTTCTCTGATTTTAGTGATGGGGAGACAGAGAACAGTGATGGTGAATATATGGATACAAAGACAGTTTCAGG TCGGCATAGCAAGTTTTCCTCCCAGCTCAAACCCAAAGCTTCACTAAGGTCCAAAATAATACACAGGTCAGACAAGAGCTTGCCAGAAGACTTGTTTGAC CAGTTAGAAGATGAGCCACTTGACTTGCTTGATCGGTACAAAACACGATCAGCCCTCCGATCAACCGCGCATCTTAAAAGAAAGCAGGAATCAGATGATG ATCCAGAGATTGACTCTGAAGGGCGGCTGATAGTTCGTGAAGGAGGGAAACCTAAGAAGGAGAAGCTCTCCAACCCCGATTCAGATGCGAGGAGTGAAGC AGGCAGTTTCAAGTCACTGAACTCCAAGAAAACTCAGAAGCGCAGGAAAACTTCAAATTCTGGGTGGGCTTACACTGGAAGTGAATATGCCAGCAAGAAA GCTGGTGGGGATGTGAAGAGGAAGGACAAGCTTGAGCCATATGCATATTGGCCCCTGGATCGCAAGATGATGAGTCGGAGACCAGAGCATCGTGCAGCTG CTAGGAAAGGTATGGCTAGTGTTGTAAAAATGACCAAGAAGCTTGAGGGCAAGAGTGCTTCAGCTGCGCTGTCTATGAAGCTCATCAAATCTAACAGTCA GAAGAAAGGCAACAAGAGAAAGAGCAGGTGA
AA sequence Show only first row Show all	>Potri.006G137900.3 pacid=42767524 polypeptide=Potri.006G137900.3.p locus=Potri.006G137900 ID=Potri.006G137900.3.v4.1 annot-version=v4.1 MEGIELDAPSLSFPENDFCDSILSRYSTSTQDDHHHLCAIIGTMSQELKDQNLPCTPIAYFGAACSSLDRLSSSYSDPSPYVIDSLITILSLALPRISIP ILKKKRELVSNVVVRVLKLNYSVTAGAVVSGLKCVAHLLSIRDSFNWDDISQLFGVLLSFMTDSRIKVRRQSHSCIRDTLLNFQGTPALAPASEAITNSF EKFLLLAGGSNAVASTDGPKGAQHVLYILDALKECLPLLSFKCVTAILKYFKTLLELRQPVVTRRVTDSLKVICLHPGLQVPAEPLLDLLCSLALYASTN ETSADNMTFTASLLDVGMKKVYSLNRQICVVKLPIVFSTLKDILASEHEEAIFAATQALKNSINSCIDESLIKQGVDQITINKNAETRKCGPTVIEKVCA IIESLLDYHYSAVWDMVFQVVSTLFDKLGNYSSYFMRGTLKNLADMQRLPDEDFPYRKQLHESLGSALGAMGPETFLSFLPLKLEVDDLSEVNVWLFPIL KQYTVGARLSFFTESVLSMVGLIKKKSRQLELDGRIISARSADALVYSLWSLLPSFCNYPLDTAESFQDLEKALCGALSEECDIRGIVCSALQVLIQQNK RIMEEQDDLTVTEVGIAEQHAIARYTLQVATDNLRVLRSSARNLLTVLSGILLESPKDDGGLLQSTIREFSSIADKEVVKRIYLKTMQKLLAVTQKATKA DNSRDSISMRIDDSSNDSRARLFDLAISLLPGLDGEQINVLYSAVKPALQDMEGLIQKRAYKVLSIILQRYDGFITPRFGELLQLMIDVLPSCHFSAKRH RLDCIYCLIVHIPKVDSEQRRHEILTSFLTEIILALKEVNKRTRNRAYDVLVQIGHTFGDEENGGKKENLYQFFNMVAGGLALESPHMISAAMKGVARLA YEFSDLVSIAYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSQAEGLQMFLGSVVEGLLRWQDDTKNHFKAKVKHILEMLVKKCGLDAVKAVMPEEHMK LLTNIRKIKERGERKHAASSDETKSHMSRATTSRISRWNHTKIFSDFSDGETENSDGEYMDTKTVSGRHSKFSSQLKPKASLRSKIIHRSDKSLPEDLFD QLEDEPLDLLDRYKTRSALRSTAHLKRKQESDDDPEIDSEGRLIVREGGKPKKEKLSNPDSDARSEAGSFKSLNSKKTQKRRKTSNSGWAYTGSEYASKK AGGDVKRKDKLEPYAYWPLDRKMMSRRPEHRAAARKGMASVVKMTKKLEGKSASAALSMKLIKSNSQKKGNKRKSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	0	1
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	2.00	0.8826
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	3.16	0.8483
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.002G203700 [exp]	3.46	0.8380
AT1G42440			unknown protein		Potri.005G250100 [exp]	4.47	0.8307
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.001G004800 [exp]	4.58	0.8077
AT1G30240			unknown protein		Potri.010G238000 [exp]	4.89	0.8342
AT2G25970			KH domain-containing protein (...		Potri.018G055300 [exp]	5.00	0.7512
AT1G63810			unknown protein		Potri.007G024600 [exp]	5.47	0.8302
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.001G417400 [exp]	5.83	0.7214
AT3G09720			P-loop containing nucleoside t...		Potri.019G065300 [exp]	8.48	0.7970

Compare expression of checked genes

Potri.006G137900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.