Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KAS2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74960 714 / 0 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT5G46290 461 / 8e-159 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT2G04540 231 / 1e-69 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062900 [exp] 855 / 0 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.004G131500 [exp] 457 / 5e-157 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 452 / 4e-155 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 452 / 6e-155 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 434 / 6e-148 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.002G219500 [exp] 226 / 9e-68 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034886 [exp] 794 / 0 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 733 / 0 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10040883 [exp] 460 / 4e-158 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 449 / 6e-154 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10015267 [exp] 451 / 6e-146 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10003195 [exp] 425 / 3e-144 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 426 / 2e-143 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 365 / 1e-122 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10014622 [exp] 234 / 1e-70 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 220 / 9e-65 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00109 [poplar] [flax] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02801 [poplar] [flax] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G138000.5 pacid=42768929 polypeptide=Potri.006G138000.5.p locus=Potri.006G138000 ID=Potri.006G138000.5.v4.1 annot-version=v4.1 ATGACGGGGTCAGGTTCATTGTCATCTCCGCTCTGCACGTGGATTGTCGCGGCGTGCATGTCGGTCACGTGCGCTAAGGAAAGCAAGCACGCTCTGTCTC CACCATCCTCGACTACTGGTAATAGAAGTCGCAGGCGGAAGGCTGCTGCTGCTGCTGCTTTGAAATGCAATAGCAATAACAAGTACAACAACTACGGCAG CGGTATGGGTGGAGGAGGACCGAGCCTGCAAGGATTAGTGAGCTCTTGCTTGGCCTTTGAACCTTGTAGTCATTACTACGCTTCTAATGGACTCCTGAGA TCCAATCGCAAGCTAAGACGACTCCATCCTCCCGCTCTTTCCGGGCAAGCCATGGCTGTAGCTGTGCAACCTACAAAGGAAGTTGAGACAAAAAAGAAAC CACATACAAAGCAAAAGCGAGTAGTTGTGACAGGGTTGGGTGTGGTGTCACCTCTTGGTCATGAACCAGATGTCTTCTACAACAATCTTCTTGAAGGTGT CAGTGGCGTATCTCAGATAGAGGCTTTTGACTGTGCTCAATTTTCCACGAGAATTGCTGGAGAAATCAAGTCTATCTCGACTGATGGATGGGTTTCACCA AAACTGGCTAAGAGAATGGATAAATTCATGCTTTATATGCTTATTGCTGGTAAAAAAGCTTTGGCAGATGGTGGGATTACTGAGGATGTGATGGATGAGT TAAATAAAGCTAAGTGTGGAGTTTTGATTGGCTCAGCAATGGGTGGGATGAAGGTTTTCAATGATGCAATTGAAGCTTTAAGGATCTCGTACAAGAAGGT GAATCCTTTTTGTGTTCCTTTTGCCACTACAAATATGGGTTCTGCCATGCTTGCAATGGATCTGGGATGGATGGGGCCAAATTATTCAATTTCCACTGCT TGTGCTACCGGCAACTTCTGTATTTTGAATGCAGCGAACCACATCATTAGAGGCGAAGCTGATGTTATGCTTTGTGGTGGCTCAGATTCAGCAATTATTC CCATTGGATTGGGGGGTTTTGTGGCATGCAGAGCACTTTCGCAGAGGAATGATGATCCGACAAAAGCTTCACGACCTTGGGATATGAATCGGGATGGATT TGTCATGGGGGAAGGAGCTGGTGTTCTGCTTCTAGAAGAATTAGAACATGCTAAGAAAAGAGGTGCCAATATCTATGCAGAGTTTCTTGGAGGGAGCTTT ACTTGTGATGCTTATCACATGACTGAGCCACGTCCTGATGGGGCTGGTGTCATTCTCTGCATAGAAAAGGCATTAGCACAGTCTGGGGTAGCTAAAGAGG ATGTGAATTACATTAATGCACATGCTACATCCACACCAGCAGGAGACCTCAAAGAGTATCATGCTCTCATGCATTGTTTTGGCCGCAACTCTGGTTTGAG GGTGAACTCAACGAAATCTATGATTGGTCACTTACTGGGAGCATCTGGTGCTGTGGAAGCCATTGCTGCAGTACAGGCAATACGGACAGGATGGGTTCAT CCAAATATCAATCTAGAAAATCCAGAGCAAGGCATGGACACGAGTGTATTAGTGGGCCCAAAGAAAGAGAGACTAGACATCAAGGCTGCACTGTCTAATT CGTTTGGGTTTGGTGGCCACAACTCGTCGATCATTTTTGCCCCATTCAAGTGA
AA sequence Show only first row Show all	>Potri.006G138000.5 pacid=42768929 polypeptide=Potri.006G138000.5.p locus=Potri.006G138000 ID=Potri.006G138000.5.v4.1 annot-version=v4.1 MTGSGSLSSPLCTWIVAACMSVTCAKESKHALSPPSSTTGNRSRRRKAAAAAALKCNSNNKYNNYGSGMGGGGPSLQGLVSSCLAFEPCSHYYASNGLLR SNRKLRRLHPPALSGQAMAVAVQPTKEVETKKKPHTKQKRVVVTGLGVVSPLGHEPDVFYNNLLEGVSGVSQIEAFDCAQFSTRIAGEIKSISTDGWVSP KLAKRMDKFMLYMLIAGKKALADGGITEDVMDELNKAKCGVLIGSAMGGMKVFNDAIEALRISYKKVNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTA CATGNFCILNAANHIIRGEADVMLCGGSDSAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEGAGVLLLEELEHAKKRGANIYAEFLGGSF TCDAYHMTEPRPDGAGVILCIEKALAQSGVAKEDVNYINAHATSTPAGDLKEYHALMHCFGRNSGLRVNSTKSMIGHLLGASGAVEAIAAVQAIRTGWVH PNINLENPEQGMDTSVLVGPKKERLDIKAALSNSFGFGGHNSSIIFAPFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.006G138000 [exp]	0	1	Pt-KAS2.2
AT5G17210			Protein of unknown function (D...		Potri.019G048300 [exp]	1.41	0.7511
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	8.60	0.7493
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.017G087900 [exp]	8.77	0.7029
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.001G406300 [exp]	12.24	0.7175
AT1G67340			HCP-like superfamily protein w...		Potri.003G171400 [exp]	18.97	0.6623
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	31.93	0.6602
					Potri.017G113101 [exp]	44.15	0.6446
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.012G124400 [exp]	44.59	0.6573
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	48.40	0.6611
					Potri.019G120050 [exp]	54.44	0.6856

Compare expression of checked genes

Potri.006G138000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.