Plant FIBer expression Database

Potri.006G138450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G138450.1 pacid=42769977 polypeptide=Potri.006G138450.1.p locus=Potri.006G138450 ID=Potri.006G138450.1.v4.1 annot-version=v4.1
ATGATGTTGGGTCCTCTTCCATGCACTCCATGTGCTTTTGATTTTGACTTCACAGCCAAAAATGAGGTTGACTGCATTCCCCAGTTGTCCAGTTTTCATG
CAATCACTCCTCTCTTGGCCGCTATGTTCTTTCTTTCTAGCATTACACCACCATCATCTTGGCTTTCAAGTCTCGATTTTTGTATAATTGGGTTACTTAG
ACCGACATATGTTTTTCTTAAAATTAGGTTTTATGGTTGCCTCCGTCTTTCATTTTCTCTTCTCCTTCCTTTTTCGATATCGTGGAGAATGCTTGATCGA
TGA
AA sequence
>Potri.006G138450.1 pacid=42769977 polypeptide=Potri.006G138450.1.p locus=Potri.006G138450 ID=Potri.006G138450.1.v4.1 annot-version=v4.1
MMLGPLPCTPCAFDFDFTAKNEVDCIPQLSSFHAITPLLAAMFFLSSITPPSSWLSSLDFCIIGLLRPTYVFLKIRFYGCLRLSFSLLLPFSISWRMLDR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G138450
[exp]
0 1
AT5G06710 HD HAT14 homeobox from Arabidopsis thal... Potri.018G133100
[exp]
12.04 0.6841
AT5G52260 MYB ATMYB19 myb domain protein 19 (.1) Potri.012G140500
[exp]
21.90 0.6718
AT5G26330 Cupredoxin superfamily protein... Potri.009G136200
[exp]
22.80 0.6305
AT4G23020 unknown protein Potri.003G121100
[exp]
23.10 0.6596
AT1G76340 GONST3 golgi nucleotide sugar transpo... Potri.008G177700
[exp]
78.26 0.5895
AT3G51060 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENC... Potri.007G017500
[exp]
97.81 0.5965
AT1G80160 GLYI7 glyoxylase I 7, Lactoylglutath... Potri.004G223300
[exp]
102.00 0.5903
Potri.019G129600
[exp]
102.13 0.5790
AT1G29470 S-adenosyl-L-methionine-depend... Potri.005G184500
[exp]
176.31 0.5660
AT5G11720 Glycosyl hydrolases family 31 ... Potri.011G154300
[exp]
207.45 0.5780

Potri.006G138450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.