Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NPH4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 734 / 0 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 714 / 0 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 504 / 9e-162 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 484 / 4e-156 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 475 / 6e-151 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 352 / 2e-105 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 329 / 4e-99 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 324 / 7e-96 ARF ARF4 auxin response factor 4 (.1) AT2G33860 309 / 2e-92 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT4G23980 308 / 7e-92 ARF ARF9 auxin response factor 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G063000 [exp] 790 / 0 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 613 / 0 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 611 / 0 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 507 / 7e-164 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.001G358500 [exp] 508 / 3e-163 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 507 / 5e-163 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 507 / 1e-162 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 502 / 3e-162 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 501 / 7e-161 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033635 [exp] 728 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10027600 [exp] 607 / 0 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017680 [exp] 500 / 2e-167 AT1G19220 550 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10022943 [exp] 509 / 3e-162 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10031354 [exp] 501 / 7e-162 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 499 / 2e-161 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 499 / 2e-161 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 497 / 1e-159 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10007386 [exp] 494 / 3e-159 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 495 / 5e-157 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.006G138500.1 pacid=42768308 polypeptide=Potri.006G138500.1.p locus=Potri.006G138500 ID=Potri.006G138500.1.v4.1 annot-version=v4.1 ATGAAGGTTCCTTCAAATGGATTCTTGCCAAATTTTGCAGAAGGGGAAAGAAAATGCATCAATTCAGAGTTGTGGCATGCTTGTGCTGGGCCACTGGTTT CCTTGCCTCCAGTTGGAAGCCTCGTAGTTTACTTCCCTCAAGGCCACAGTGAGCAGGTTGCAGCATCAATGCAAAAGGAGACTGATTTCATACCCAGCTA CCCCAACCTTCCTTCCAAGTTGATTTGTATGCTTCATAATGTCACATTGCATGCTGATGTGGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCA GTAAGCAAATATGAGAAGGAAGCACTGCTAGCGTCTGACATGGGGCTAAAGCAAAACAGGCAACCTACCGAGTTCTTCTGCAAAACTCTTACAGCTAGTG ATACAAGTACTCATGGTGGATTTTCTGTACCTCGTCGAGCAGCTGAGAAGATCTTCCCTCCTCTAGACTTTTCAATGCAACCACCTGCTCAGGAGCTGGT GGCCAGAGATTTACACGACAATACATGGACGTTTAGGCATATTTATCGAGGGCAACCAAAAAGGCACCTGCTCACTACAGGTTGGAGTGTCTTTGTCAGC ACAAAAAGACTTTTTGCTGGTGATTCCGTTCTATTCATAAGAGATGAGAAATCACAGCTTCTCTTGGGTATAAGGCGTGCTAATAGACAACAACCAGCTC TCTCTTCATCAGTTATATCCAGTGATAGTATGCATATTGGAATTCTTGCTGCCGCAGCTCATGCTGCTGCAAACAACAGCCCATTCACTATATTCTACAA TCCAAGGGCAAGCCCTTCTGAGTTTGTGATTCCCTTCTCCAAGTATAATAAAGCCTTGTACACGCAAGTGTCACTTGGCATGAGATTTAGAATGATGTTT GAGACTGAAGAGTCAGGAGTCCGCAGATACATGGGTACAATCACTGGTATCAGTGATATGGATCCAGTGCGCTGGAAAAATTCGCAGTGGCGCAATCTTC AGGTTGGGTGGGATGAATCAACTGCAGGTGAACGGCCAAGCAGAGTTTCGATTTGGGAGATTGAGCCTGTTGTAACTCCTTTCTACATATATCCACCTCC GTTTTTCAGACCAAAGTTCCCTAAGCAGCCAGGGATGCCAGATGACGATTCTGATATAGAGAATGCTTTTAAGAGAGCCATGCCTTGGCTTGGAGATGAA TTTGGCATGAAGGATCCCCCAAGCTCAATCTTTCCTGGTTTGAGCTTAGTTCAATGGATGAGCATGCAGCAAAATAATCAGTTTCCAGCTACTCAATCAG GATTATTCCCATCGATGGTTCCTTCCAATGCCCTGCATAATAATCTTAGCACTGATGATCCATCAAAGGTATTGAATTTTCAAGCCCCTGGCCTATCTCC TCCAAGTGTCCAACTTAACAAGACAAATCCACAAAACCAAGTCGGTCAGTTGCCTCAGCCACCAATGGCATGGACTCAACAACAGCAGCTGCAACAATTA TTGCAGACTCCTATTAACCAACAGCAGCCACCTTATCCACATCAGCAGCAGCAGCAGCCACCTTATCCACATCAGCAGCAGCAGCAGCAGCAACCTATTT CCCAACAGCAACAGCATCAGCATTGGCCACAGCAACAGCAACAGCCGCAGCTGCAGCCACCACAAATACGACAACCACCACCACAAATACAACAGCATCA ACAGCAGCAGCAGATTTTCCAACCACCTACACTCAATGACAGTGTGGTTGCCCCTAACCAAATTCCAAATCAGAATTTGCAGCAACCAGTTGTATACTCT CAGCTTCAGCAGCAGCAGCAGTTACTGGCAAGCAATACCCAATCCCAAAGCATACCTTCTGCTAATAAAAGTTCATATCCACTGACCTCTTTACCACAAG ACTCACAGCTTCATCAACAAATGGAGCAACAATCTAACCTCTCACAGAGACAACAGCAGCAGACTCAATTGCAACAGTCCCCTCTGCTGTTGATACAGCA AAACCTATCACAGAGGGCACAGCCACAGCAACAGCAACAGCAACAATTGCAACAACTATCACAGCCCAGCCACTCTGAGCAACAGCTTCACTTTCAGTTA CTACAGAAGTTGCAGCAGCATCAGCAGTTGCCCTCCCCTGCAAGCTCAGTTCTGCAGTCTCAGCAGCTACAGCAACAACAACAGCAGACCCACCAGCAAC ACCAGCAACTTCAGCAGTCACCTCTGTCACAGAATCAGCAGCCACCTCTGTCACAGAATCAGCAGCCACTTGGCAGTAACAGCTTCTCAACAGCCGCACT TATGCAAACACAATCTTTTCCTATGAACCAGCCCCAAGGATTGCAGAAACCACCTATGGCAGTTAGAGCACGTTCAAGTATTACAGATGGAGAAGCGCCA TCTTGTTCAACCTCACCTTCCACTAATAATTGCCAGATTTCTCCACAAAATTTCCTGAACAGAAACCATCTAGCTCCGGCCATGTTGATGGGTGATTCAG CTATTGAGCCTGCAAGTAATCTTGTTCAAGATCTCCAAAACAAGTCTGAAATTCGTGTCAAGAATGAGTTTCCCAGCTCAAGAGGTCTAGACCAACTAAA ATATAAAGGTGCTGTGACTGATCAATTGGAAGCTTCCTCTTCCGGAACATCATATTGCCTAGATGCTGGTAACATCCAGCAGAATTTCTCAGTCCCAACC TTTGGCTTGGATAGTGATGTCCAGTCACATCCTCGAAACAGTCTTCCTTTTGCATCTAATATTGATGCTTTGGCACCCGATACTTTATTGTCAAGGGGAT ATGACTCTCAAAAGGATCTTCAGAACTTGCTTGCTAATTATGGTGGTACTACACGAGATATTGAGACAGAGTTGTCCACAGCTGCAATTAGCTCCCAGTC ATTTGCTGTGCCAAACATACCTTTCAAGCCTGGTTGTTCGAATGACGTTGCCATCAATGATACTGGGGTTTTGAACAATGGATTGTGGACCAACCAGACC AACCAGACTCAACGGATGCGTACATATACGAAGGTCCAAAAGCGTGGCTCAGTTGGAAGATCTATTGATGTCACTCGTTATAAAGGTTATAACGAGCTGA GACATGATCTTGCCCGAATGTTTGGCATTGAAGGGCAACTAGAAGATCCACAAAGTTCAGACTGGAAACTGGTTTATGTTGATCATGAAAATGACATATT ACTTGTTGGAGACGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATACTGTCATCTGCTGAAGTGCAACAGATGAGCTTGGATGGAGAT CTTGGTAGTCGAGCTCCTGCCACAGATGTGGTGCTAGGTGCTAGAGCTGTGGATTGTCCAACAGCAATCCCCCAAATACTGTCACCTTTGTTGCAACTTT TGCCTTCAGATGGTAGTATCCCTAGTAGTTCAACTTTGGATTACATCCGGGAGAGTGGACAGGAGGCAAAGGATCCATGA
AA sequence Show only first row Show all	>Potri.006G138500.1 pacid=42768308 polypeptide=Potri.006G138500.1.p locus=Potri.006G138500 ID=Potri.006G138500.1.v4.1 annot-version=v4.1 MKVPSNGFLPNFAEGERKCINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETDFIPSYPNLPSKLICMLHNVTLHADVETDEVYAQMTLQP VSKYEKEALLASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVS TKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPFSKYNKALYTQVSLGMRFRMMF ETEESGVRRYMGTITGISDMDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYIYPPPFFRPKFPKQPGMPDDDSDIENAFKRAMPWLGDE FGMKDPPSSIFPGLSLVQWMSMQQNNQFPATQSGLFPSMVPSNALHNNLSTDDPSKVLNFQAPGLSPPSVQLNKTNPQNQVGQLPQPPMAWTQQQQLQQL LQTPINQQQPPYPHQQQQQPPYPHQQQQQQQPISQQQQHQHWPQQQQQPQLQPPQIRQPPPQIQQHQQQQQIFQPPTLNDSVVAPNQIPNQNLQQPVVYS QLQQQQQLLASNTQSQSIPSANKSSYPLTSLPQDSQLHQQMEQQSNLSQRQQQQTQLQQSPLLLIQQNLSQRAQPQQQQQQQLQQLSQPSHSEQQLHFQL LQKLQQHQQLPSPASSVLQSQQLQQQQQQTHQQHQQLQQSPLSQNQQPPLSQNQQPLGSNSFSTAALMQTQSFPMNQPQGLQKPPMAVRARSSITDGEAP SCSTSPSTNNCQISPQNFLNRNHLAPAMLMGDSAIEPASNLVQDLQNKSEIRVKNEFPSSRGLDQLKYKGAVTDQLEASSSGTSYCLDAGNIQQNFSVPT FGLDSDVQSHPRNSLPFASNIDALAPDTLLSRGYDSQKDLQNLLANYGGTTRDIETELSTAAISSQSFAVPNIPFKPGCSNDVAINDTGVLNNGLWTNQT NQTQRMRTYTKVQKRGSVGRSIDVTRYKGYNELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGD LGSRAPATDVVLGARAVDCPTAIPQILSPLLQLLPSDGSIPSSSTLDYIRESGQEAKDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	0	1	Pt-NPH4.2
AT3G18770			Autophagy-related protein 13 (...		Potri.019G010700 [exp]	1.73	0.8656
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Potri.007G028800 [exp]	3.87	0.8546
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	4.47	0.8083
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073441 [exp]	4.58	0.8208
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	4.89	0.8270
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	5.09	0.8035
AT3G22550			Protein of unknown function (D...		Potri.005G211500 [exp]	5.29	0.7795
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.001G155100 [exp]	6.32	0.7926	HAT1.3
AT5G02420			unknown protein		Potri.001G212300 [exp]	8.12	0.7715
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	8.94	0.8428

Compare expression of checked genes

Potri.006G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.