Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20710 907 / 0 BGAL7 beta-galactosidase 7 (.1) AT1G31740 836 / 0 BGAL15 beta-galactosidase 15 (.1) AT2G28470 795 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G36360 736 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 733 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 728 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 677 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G63810 676 / 0 BGAL10 beta-galactosidase 10 (.1) AT4G26140 665 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 663 / 0 BGAL2 beta-galactosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062800 [exp] 1132 / 0 AT5G20710 914 / 0.0 beta-galactosidase 7 (.1) Potri.001G025701 [exp] 941 / 0 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.001G025800 [exp] 927 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.009G012400 [exp] 815 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 748 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 741 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 738 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 733 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.006G144500 [exp] 731 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037644 [exp] 752 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 748 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 743 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 727 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 726 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10022645 [exp] 723 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10006733 [exp] 722 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10016655 [exp] 716 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10003343 [exp] 709 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10028348 [exp] 693 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0058 [poplar] [flax] PF02140 [poplar] [flax] Gal_Lectin Galactose binding lectin domain
Representative CDS sequence Show only first row Show all	>Potri.006G139100.3 pacid=42768184 polypeptide=Potri.006G139100.3.p locus=Potri.006G139100 ID=Potri.006G139100.3.v4.1 annot-version=v4.1 ATGCCGGGTTCCTGGATTGGTATTCTTCTCATTGCTAGTTTAGGTTTGATAGGTTCCTGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGAAT ATGATTCTAGTGCTGTTATCATCAATGGCCAAAGAAAAATTATTCTCTCAGGATCAATTCACTATCCTCGTAGCACTGTTGAGATGTGGTCAGATTTGAT TCAGAAAGCAAAGGAAGGAGGACTTGATACGATTGAAACATACATTTTCTGGAACGCACACGAGCGTCGCCGTCGTGAGTATAATTTCACGGGCAACCTA GACTTTGTAAAGTTTTTCCAAAAAGTGCAAGAAGCAGGGCTATATGGCATTCTCCGAATTGGTCCTTATGCCTGTGCTGAATGGAACTACGGGGGCTTCC CTGTGTGGCTACACAATATTCCAGAAATCAAATTCAGGACAGACAATGAGATTTTCAAGAATGAAATGCAGACTTTTACAACCAAGATTGTGAACATGGC TAAAGAAGCGAAGCTTTTTGCATCGCAAGGAGGACCTATAATTCTCGCACAGATAGAGAACGAATATGGAAATGTCATGGGGCCTTACGGAGAAGCAGGG AAATCATACGTTCAGTGGTGCGCGCAAATGGCTGTAGCCCAAAATATTGGTGTACCCTGGATTATGTGCCAGCAGAGCGATTCTCCATCATCCGTGATTA ACACATGCAATGGATTCTACTGCGATACATTTACACCAAACAGTCCAAAAAGTCCGAAAATGTGGACTGAAAACTGGACTGGCTGGTACAAGAAATGGGG CCAAAAAGATCCACACAGGACTGCCGAAGATTTAGCATTTTCAGTGGCACGCTTTTTCCAGTACAATGGAGTGTTGCAGAACTACTACATGTATTATGGA GGAACCAACTTTGGACGCACGTCAGGAGGCCCATTTATCGCAACATCTTACGACTATGATGCACCACTTGATGAATACGGAAATTTAAACCAGCCCAAGT GGGGACACCTCAAAAACCTCCATGCAGCACTCAAATTGGGGGAGAAGATTCTGACTAACAGCACAGTGAAAACAACAAAATATTCAGATGGGTGGGTTGA GCTGACTACGTACACCAGCAACATTGATGGGGAGAGATTGTGTTTCCTGAGCAACACAAAAATGGATGGTCTAGATGTTGACTTGCAACAAGATGGAAAG TACTTTGTGCCTGCTTGGTCTGTTAGTATTCTTCAAGATTGTAACAAGGAAACTTACAACACTGCAAAGGTTAACGTCCAAACCTCTTTGATTGTAAAGA AATTACATGAGAATGATACACCTCTAAAACTCTCCTGGGAGTGGGCACCAGAGCCAACTAAAGCCCCCCTCCACGGACAAGGTGGTTTTAAAGCGACTCA GCTTCTTGAACAAAAGGCGGCAACATATGATGAAAGTGACTACTTATGGTACATGACTAGCGTTGACAATAATGGGACAGCCTCGAAAAATGTGACGTTG CGTGTGAAGTATTCAGGGCAATTCCTTCATGCTTTTGTTAATGGGAAGGAGATAGGTTCCCAACATGGTTACACTTTCACATTCGAGAAACCTGCTTTGC TGAAGCCCGGGACAAACATTATTTCTTTGCTCAGTGCCACTGTTGGACTGCAGAACTATGGTGAATTTTTTGATGAGGGACCTGAAGGCATAGCAGGAGG TCCCGTTGAGTTGATCGACAGCGGCAACACCACCACTGATTTATCATCAAACGAGTGGAGTTATAAGGTTGGATTGAATGGTGAGGGGGGACGATTCTAC GATCCAACTTCAGGCCGTGCCAAATGGGTCTCAGGTAATCTTCGTGTGGGGAGAGCCATGACCTGGTATAAGACCACCTTCCAGGCTCCATCAGGAACCG AACCTGTGGTGGTGGACTTGCAAGGTATGGGCAAGGGTCATGCCTGGGTGAATGGGAATAGTCTAGGTCGCTTCTGGCCAATATTGACTGCCGATCCCAA CGGATGCGATGGCAAATGTGATTACCGTGGACAATATAAGGAGGGCAAATGCCTGTCAAATTGTGGCAATCCAACTCAAAGATGGTATCATGTCCCAAGA TCATTCCTCAACAATGGCTCAAACACATTGATTTTGTTCGAGGAAATCGGAGGAAACCCTTCAGATGTTTCTTTCCAGATTACGGCAACTGAAACAATAT GCGGAAATACATATGAAGGAACCACATTAGAATTATCATGCAACGGTGGACGAAGAATCATCTCAGATATCCAATACGCCAGCTTTGGAGACCCGCAGGG AAGCAGCTGCGGCTCATTCCAGAGAGGCAGCGTTGAGGCCAGTCGTAGCTTTTCTGCAGTTGAAAAGGCGTGCATGGGAAAGGAGAGTTGTTCAATAAAC GTCTCAAAAGCAACATTTGGAGTAGAAGATAGCTTTGGCGTTGATAATAACAGGCTGGTTGTTCAAGCTGTATGCACATGA
AA sequence Show only first row Show all	>Potri.006G139100.3 pacid=42768184 polypeptide=Potri.006G139100.3.p locus=Potri.006G139100 ID=Potri.006G139100.3.v4.1 annot-version=v4.1 MPGSWIGILLIASLGLIGSCSAAAAAAAAAAVEYDSSAVIINGQRKIILSGSIHYPRSTVEMWSDLIQKAKEGGLDTIETYIFWNAHERRRREYNFTGNL DFVKFFQKVQEAGLYGILRIGPYACAEWNYGGFPVWLHNIPEIKFRTDNEIFKNEMQTFTTKIVNMAKEAKLFASQGGPIILAQIENEYGNVMGPYGEAG KSYVQWCAQMAVAQNIGVPWIMCQQSDSPSSVINTCNGFYCDTFTPNSPKSPKMWTENWTGWYKKWGQKDPHRTAEDLAFSVARFFQYNGVLQNYYMYYG GTNFGRTSGGPFIATSYDYDAPLDEYGNLNQPKWGHLKNLHAALKLGEKILTNSTVKTTKYSDGWVELTTYTSNIDGERLCFLSNTKMDGLDVDLQQDGK YFVPAWSVSILQDCNKETYNTAKVNVQTSLIVKKLHENDTPLKLSWEWAPEPTKAPLHGQGGFKATQLLEQKAATYDESDYLWYMTSVDNNGTASKNVTL RVKYSGQFLHAFVNGKEIGSQHGYTFTFEKPALLKPGTNIISLLSATVGLQNYGEFFDEGPEGIAGGPVELIDSGNTTTDLSSNEWSYKVGLNGEGGRFY DPTSGRAKWVSGNLRVGRAMTWYKTTFQAPSGTEPVVVDLQGMGKGHAWVNGNSLGRFWPILTADPNGCDGKCDYRGQYKEGKCLSNCGNPTQRWYHVPR SFLNNGSNTLILFEEIGGNPSDVSFQITATETICGNTYEGTTLELSCNGGRRIISDIQYASFGDPQGSSCGSFQRGSVEASRSFSAVEKACMGKESCSIN VSKATFGVEDSFGVDNNRLVVQAVCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.006G139100 [exp]	0	1
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Potri.002G041500 [exp]	11.74	0.8140	Pt-BET11.2
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.001G402400 [exp]	13.82	0.8156	Pt-MLO11.1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	22.49	0.7991	Pt-PGP1.1
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	22.51	0.8126
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	34.78	0.8080	Pt-KUP10.1
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060300 [exp]	39.69	0.8016
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	65.29	0.7841
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	70.79	0.7841
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	72.86	0.7840
AT5G25170			PPPDE putative thiol peptidase...		Potri.018G021700 [exp]	77.78	0.7709

Compare expression of checked genes

Potri.006G139100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.