Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) AT1G74940 134 / 1e-38 Protein of unknown function (DUF581) (.1) AT1G19200 75 / 4e-16 Protein of unknown function (DUF581) (.1) AT1G22160 73 / 7e-16 Protein of unknown function (DUF581) (.1) AT5G11460 73 / 8e-15 Protein of unknown function (DUF581) (.1) AT1G78020 67 / 8e-14 Protein of unknown function (DUF581) (.1) AT5G49120 66 / 3e-13 Protein of unknown function (DUF581) (.1) AT3G63210 66 / 2e-12 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT2G25690 66 / 2e-12 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT2G44670 62 / 2e-12 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035400 [exp] 86 / 2e-19 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.018G146800 [exp] 81 / 4e-18 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 82 / 1e-17 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 70 / 9e-15 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 70 / 4e-14 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 68 / 5e-14 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 64 / 1e-12 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 66 / 2e-12 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 66 / 3e-12 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027642 [exp] 80 / 4e-18 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 72 / 3e-15 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 72 / 4e-15 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 73 / 2e-14 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10022948 [exp] 67 / 2e-13 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 66 / 1e-12 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 63 / 3e-11 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 61 / 1e-10 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10019672 [exp] 59 / 1e-10 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 59 / 2e-10 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.006G139200.1 pacid=42769987 polypeptide=Potri.006G139200.1.p locus=Potri.006G139200 ID=Potri.006G139200.1.v4.1 annot-version=v4.1 ATGTTAGGCAAGAGAACAAATCCTATGATCGGAAGATTGTCGGAATTATTGGTCTCAGGCACCCGTGCCAAGTTCATGGATGCTAACACCAGTCCTAGAA GTCCACTGGACTACATGAACCAGTCACCAAAAGGTCTAAAGAATTATCATGATCTCGGTGGGGTTGGATTGGGTATTGTTGCAGCCCTTGACAAGCCTTC TAATACTGATGTGGGGCATGAAGTTTTGGCTAAGTATGCTGTTTGCAGGTCAAATTTGAATAGATCAAATCCAATTCCAGTTAATTCTGGTAAAGATTGT GAGATATTTAACTGTGGTTTTGAGGAAATGGATATGAAGAGCTTGGAAGACTATACATATGTCACAATCCATGCTCCTAATCAATCATTCACGAAGGTTT ACTATGATGGAGGTGAATATGGAAAACAAGGGCATGATAGAAGATGTGAGAACATGGGATGTACTTCTGTTCCTAAGGGATTTCCTGCCAGACTTGTCGA GGATGTTCCCGTATATCCCACTTCAGATTTTCTGAGTTCATGCCACTTGTGCAGGAAAAAACTCTACGGCAGAGACATCTACATCTACAGGGGAGAGAAA GCATTCTGCAGCGTGGAGTGTCGATCGAGTCAAATAATGATAGACGAGCGCAAAGAACAGTGCAGATCAGAAGTTGCGAGATCTGCAGATGTTTCAAGCT CGCCTTTCAAAACAAGCCCCATCTTCTCAACTGGGATTCTTGCAATTTAG
AA sequence Show only first row Show all	>Potri.006G139200.1 pacid=42769987 polypeptide=Potri.006G139200.1.p locus=Potri.006G139200 ID=Potri.006G139200.1.v4.1 annot-version=v4.1 MLGKRTNPMIGRLSELLVSGTRAKFMDANTSPRSPLDYMNQSPKGLKNYHDLGGVGLGIVAALDKPSNTDVGHEVLAKYAVCRSNLNRSNPIPVNSGKDC EIFNCGFEEMDMKSLEDYTYVTIHAPNQSFTKVYYDGGEYGKQGHDRRCENMGCTSVPKGFPARLVEDVPVYPTSDFLSSCHLCRKKLYGRDIYIYRGEK AFCSVECRSSQIMIDERKEQCRSEVARSADVSSSPFKTSPIFSTGILAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20700			Protein of unknown function (D...		Potri.006G139200 [exp]	0	1
AT5G53330			Ubiquitin-associated/translati...		Potri.012G033300 [exp]	3.00	0.9424
AT3G16560			Protein phosphatase 2C family ...		Potri.008G207700 [exp]	5.09	0.9168
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	8.36	0.9297	Pt-ICK5.1,7
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Potri.016G068700 [exp]	10.95	0.9176
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	11.09	0.9272
AT5G06490			RING/U-box superfamily protein...		Potri.008G019000 [exp]	12.44	0.9039
AT1G22160			Protein of unknown function (D...		Potri.002G092900 [exp]	12.48	0.9249
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069600 [exp]	12.72	0.9144
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.010G095800 [exp]	14.07	0.8926
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.013G046900 [exp]	15.77	0.8615

Compare expression of checked genes

Potri.006G139200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.