Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 580 / 0 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 569 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 554 / 0 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G19130 139 / 9e-37 ATRBP47B RNA-binding protein 47B (.1) AT5G19350 137 / 3e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 135 / 2e-35 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49600 134 / 1e-34 ATRBP47A RNA-binding protein 47A (.1) AT5G54900 130 / 9e-34 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 126 / 3e-32 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 122 / 9e-31 ATRBP47C RNA-binding protein 47C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166100 [exp] 628 / 0 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 605 / 0 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G279600 [exp] 516 / 0 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 513 / 0 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.009G054400 [exp] 144 / 1e-38 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 139 / 6e-37 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 139 / 1e-36 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 138 / 2e-36 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.002G128100 [exp] 137 / 5e-36 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008130 [exp] 587 / 0 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10011924 [exp] 582 / 0 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 558 / 0 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10013167 [exp] 501 / 5e-178 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10036435 [exp] 385 / 1e-126 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10041109 [exp] 348 / 1e-117 AT1G17370 378 / 3e-129 oligouridylate binding protein 1B (.1.2) Lus10021754 [exp] 137 / 6e-36 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 136 / 6e-36 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 136 / 7e-36 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012070 [exp] 134 / 2e-35 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G139300.1 pacid=42770379 polypeptide=Potri.006G139300.1.p locus=Potri.006G139300 ID=Potri.006G139300.1.v4.1 annot-version=v4.1 ATGATGCAACAGCAGAGGCTAAAACAACAGGCCATGATGCAGTATCTTCATCCTGCTCTCCTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAATC TGCCTCCTGGCTTTGATTCAAGTACTTGCCGCAGTGTGTATGTAGGAAACATCCACCCACAAGTTACAGATCCCCTTCTTCAAGAGGTTTTCTCAAACAC TGGACCTATTGAAGGATGTAAGCTCATTCGGAAAGATAAGTCATCCTATGCCTTTGTGGATTACTTTGATCGCAGATCCGCCGCTCTTTCCATATTGACC CTTAATGGAAGGCATCTGTTTGGGCAGCCTATTAAAGTTAATTGGGCTTATGCTAGTAGTCAGAGAGAGGATACATCAGGTCATTATAATATCTTTGTTG GTGATCTTAGCCCTGAAGTTACAGATGCTACATTGTATGCATGTTTCTCTGCATATCCTAGTTGTTCAGATGCAAGGGTTATGTGGGACCAGAAGACTGG TCGTTCTAGAGGATTTGGATTTGTTTCTTTCAGGAATCAGCAGGAGGCTCAAAATGCAATTAATGACTTAAATGGAAAGTGGCTTGGGAGCAGACAAATT CGGTGTAATTGGGCCACCAAAGGTGCCAATACTAATGACGACAAGCCAAGTACTGATGCCAAAAGTATAGATCTAACAAATGGAACATCAGAAGATGGTC AGGAAAGGAATAATGATGATGCTCCAGAGAACAATCCTCAGTATACCACAGTTTATGTTGGCAATCTTGCTCCTGAGGTTACTTCTGTTGATCTACATCG GCACTTCCATATGCTTGGTGCTGGAACTATTGAAGATGTGCGGGTGCAACGTGACAAAGGTTTTGGGTTTGTGAGATACAGCACCCATGCTGAAGCAGCT CTGGCTATTCAGATGGGAAATGCTCGAATTATGTATGGAAAACCAATTAAGTGTTCATGGGGTAGCAAGCCCACTCCCCCAGGGACAAGCTCTACCCCTC TTCCCCCACCAGCTGCTGGACATATGCCAAGCCTTTCAGCTGCTGAACTTGCAGTTGCAGCCTATGAACAGCAGATGGCATTGAGCAAATACGGTGCACC GGCCCTTATGCATCCACAGGGTCATCATGCCCTTAAGCAGGCAGTCATGGGAATGGGTACTGTTGGAAGTAGCCAGGCAATTTATGATGGTGGGTTCCAG AATGCTGCAACAACACAGCAGCTAATGTACTACCACTAA
AA sequence Show only first row Show all	>Potri.006G139300.1 pacid=42770379 polypeptide=Potri.006G139300.1.p locus=Potri.006G139300 ID=Potri.006G139300.1.v4.1 annot-version=v4.1 MMQQQRLKQQAMMQYLHPALLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTDPLLQEVFSNTGPIEGCKLIRKDKSSYAFVDYFDRRSAALSILT LNGRHLFGQPIKVNWAYASSQREDTSGHYNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQNAINDLNGKWLGSRQI RCNWATKGANTNDDKPSTDAKSIDLTNGTSEDGQERNNDDAPENNPQYTTVYVGNLAPEVTSVDLHRHFHMLGAGTIEDVRVQRDKGFGFVRYSTHAEAA LAIQMGNARIMYGKPIKCSWGSKPTPPGTSSTPLPPPAAGHMPSLSAAELAVAAYEQQMALSKYGAPALMHPQGHHALKQAVMGMGTVGSSQAIYDGGFQ NAATTQQLMYYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.006G139300 [exp]	0	1
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Potri.002G103700 [exp]	3.31	0.7675	Pt-CUTA.1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.001G094900 [exp]	3.46	0.7640	Pt-UBC.7
					Potri.001G092600 [exp]	4.24	0.7598
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Potri.003G074300 [exp]	6.24	0.7231	Pt-SETH1.1
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Potri.008G203400 [exp]	7.93	0.7434
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	9.48	0.7453
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.014G001000 [exp]	11.48	0.7262
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	12.04	0.7466
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Potri.006G161400 [exp]	14.00	0.6977
AT4G32090			Beta-1,3-N-Acetylglucosaminylt...		Potri.009G129400 [exp]	15.00	0.7196

Compare expression of checked genes

Potri.006G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.