Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42950 786 / 0 Pectin lyase-like superfamily protein (.1) AT1G19170 780 / 0 Pectin lyase-like superfamily protein (.1) AT3G48950 399 / 4e-135 Pectin lyase-like superfamily protein (.1) AT3G62110 396 / 3e-134 Pectin lyase-like superfamily protein (.1) AT2G23900 384 / 4e-129 Pectin lyase-like superfamily protein (.1) AT4G23820 381 / 1e-128 Pectin lyase-like superfamily protein (.1) AT4G33440 373 / 5e-125 Pectin lyase-like superfamily protein (.1) AT5G41870 368 / 1e-123 Pectin lyase-like superfamily protein (.1) AT3G61490 369 / 2e-123 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 363 / 4e-121 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062700 [exp] 948 / 0 AT1G19170 789 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 405 / 8e-138 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 402 / 2e-136 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 397 / 5e-134 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 393 / 6e-133 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.007G105800 [exp] 390 / 1e-131 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 383 / 1e-128 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 380 / 6e-128 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 369 / 1e-123 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039909 [exp] 889 / 0 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027646 [exp] 751 / 0 AT3G42950 686 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 400 / 2e-135 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 389 / 3e-131 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 388 / 3e-131 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 385 / 1e-129 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 377 / 3e-126 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 372 / 2e-124 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 371 / 2e-124 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027516 [exp] 368 / 6e-123 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.006G139500.1 pacid=42770417 polypeptide=Potri.006G139500.1.p locus=Potri.006G139500 ID=Potri.006G139500.1.v4.1 annot-version=v4.1 ATGATGGTAGAGACTATAGCACCGCCACCGAGCAGTCGTTTCAATTACAAAAGGCTTGAACTAAAACGCTGCCTTCCTGCTTTTTTATCTTCTCACAAAA CTCTCTTTGCTCTCCTCTGGATCGCCGCCTTCGCCTCCGTCTTTCTATGGAAACGCAATCCCGTTGGTGCTGGGCTCGCCGTTTTCTGGAGAGGACCCCT CCGCCCCATGCCTCAACTGCGTCCCGTGGCTTTCAATTTGACGGATTTTGGTGCCGTCGGTGATGGTGCTACTGTAAATACCGAGGCTTTTGAGAGGGCA GTTTCGGCAATCTCGAAATTGAGCAAGAGAGGTGGTGGCCAACTTAATGTGCCTCCAGGGAGATGGTTAACGGCACCGTTTAATTTGACTAGTCATATGA CTCTTTTTCTTGCTGAGGGTGCTGTTATACTTGGAATCCAGGATGAGAAGTATTGGCCTTTAATGCCTGCATTGCCTTCATATGGGTATGGGAGAGAGCA TCCTGGACCTCGATATGGAAGTTTAATCCATGGTCAAAACCTCAGAGATGTTGTTATAACTGGACACAATGGTACCATAGATGGACAGGGTCAAACATGG TGGAAGAAGTATCGCCAAAAGCTACTCAACCACACTAGGGGCCCCCTTGTGCAGATAATGTGGTCAAGTGACATTGTGTTTACGAACATAACTCTGCGAG ATTCCCCATTTTGGACACTTCATCCATATGACTGCAAGAATGTAACAATCAGGAATGTTACGATTCTGGCACCCATATTTGAAGCCCCAAATACTGATGG AATTGATCCTGATTCGTGTGAGGATATGGTAATCGAAGATTGTTACATAAGTGTGGGTGATGATGCGATTGCAATAAAGAGTGGCTGGGATCAGTATGGA ATTGCATATGGACGACCTTCAACGAATATTCTCATCCGTAATCTTGTAGTTCGCTCTATGGTCAGTGCCGGTATATCAATTGGCAGTGAGATGTCAGGTG GGGTATCAAATGTCACCGTGGAGAACGTCCTTGTGTGGAGCTCAAGGCGTGCAGTTCGGATCAAGACTGCTCCTGGAAGAGGGGGGTATGTCCGACATAT AACTTACAGGAACCTGACATTTGACAATGTAAGAGTTGGAATTGTTATCAAGACGGATTACAATGAACACCCTGATGAAGGTTATGATCCAAAAGCTGTT CCAATACTTGGGGACATAAGCTTCACTGGAATCCATGGTCAAGGAGTTCGGGTGCCTGTTCGCATACATGGAAGCCAAGAAATTCCAGTTAGGAATGTGA CTTTTTGGGATATGTCAGTGGGTTTAACTTACAAGAAGAAGCACATATTCCAGTGTGCCTTTGTTCAAGGTCGTGTAATAGGGACTGTCTTCCCTGCCCC ATGTGAAAACCTTGATCGGTATGACGAACAAGGAAAGCTAGTTAAGCGATCTGTCTCCCAAAACTTAACAGATATAGATTATGATTTTTGA
AA sequence Show only first row Show all	>Potri.006G139500.1 pacid=42770417 polypeptide=Potri.006G139500.1.p locus=Potri.006G139500 ID=Potri.006G139500.1.v4.1 annot-version=v4.1 MMVETIAPPPSSRFNYKRLELKRCLPAFLSSHKTLFALLWIAAFASVFLWKRNPVGAGLAVFWRGPLRPMPQLRPVAFNLTDFGAVGDGATVNTEAFERA VSAISKLSKRGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAVILGIQDEKYWPLMPALPSYGYGREHPGPRYGSLIHGQNLRDVVITGHNGTIDGQGQTW WKKYRQKLLNHTRGPLVQIMWSSDIVFTNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAIAIKSGWDQYG IAYGRPSTNILIRNLVVRSMVSAGISIGSEMSGGVSNVTVENVLVWSSRRAVRIKTAPGRGGYVRHITYRNLTFDNVRVGIVIKTDYNEHPDEGYDPKAV PILGDISFTGIHGQGVRVPVRIHGSQEIPVRNVTFWDMSVGLTYKKKHIFQCAFVQGRVIGTVFPAPCENLDRYDEQGKLVKRSVSQNLTDIDYDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42950			Pectin lyase-like superfamily ...		Potri.006G139500 [exp]	0	1
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	3.00	0.9490
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	3.46	0.9470
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	4.00	0.9363
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.015G124800 [exp]	4.00	0.9218
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	4.89	0.9374
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	5.91	0.9355
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.003G132000 [exp]	7.74	0.9297
AT1G15260			unknown protein		Potri.018G080001 [exp]	8.83	0.8967
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	10.95	0.9192	CESA.2
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	14.07	0.9212

Compare expression of checked genes

Potri.006G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.