Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42880 610 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 588 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 399 / 6e-131 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 385 / 2e-125 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 299 / 7e-93 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 297 / 9e-92 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 292 / 3e-90 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT4G31250 278 / 4e-84 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 273 / 9e-83 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 270 / 1e-81 ATPRK2A Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G166300 [exp] 602 / 0 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 563 / 0 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 432 / 5e-143 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 417 / 2e-137 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 400 / 2e-131 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 392 / 3e-128 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 389 / 2e-127 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 387 / 2e-126 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 293 / 1e-90 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015678 [exp] 501 / 7e-171 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10038128 [exp] 488 / 2e-169 AT5G20690 462 / 2e-159 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 472 / 4e-159 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 447 / 1e-150 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 434 / 2e-145 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 392 / 1e-127 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037688 [exp] 366 / 2e-121 AT3G42880 337 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 372 / 3e-120 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 374 / 7e-120 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 363 / 1e-116 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G139700.1 pacid=42769408 polypeptide=Potri.006G139700.1.p locus=Potri.006G139700 ID=Potri.006G139700.1.v4.1 annot-version=v4.1 ATGGCTGCTGTTCGTATTCGTACCGTCTTCGTGCTTTCCCTTCTCACCTTCTCCCTCTCCCTCTCCAAACTTGCATTTTCCTTGACAGAAAACGAGGCTC TCCTCAAGGTCAAGAGCTCTTTCACCAACGCTGAGGCATTGGATGATTGGGATTCACGTTCCTCTCCTTGTGTTAAGAGATGGGCTGGTATCATTTGTTT TGGTGGTCTCATCACAGGTCTCCATCTCTCAGACTTTGGTCTGTCAGGAACAATTGATATTGAGGCATTGCAACAACTCCGTGCTCTTCGAACCCTCAGT TTAAAGAACAACTCTTTCTCCGGTCAAATCCCAGCGTTCAATAAATTGGGTGCACTGAAATTACTCTTGTTGTCTCACAACAAGTTTTCAGGCCAAATAC CAAATGATTTCTTTTCCTCCATGGCATCTTTAAAGAAAGTTTGGCTGTCTAATAATGATTTCACAGGGAATATACCTGTTTCATTAATGAGTTTACCGCA TCTATTGGAACTTCATCTCGAAGGCAACCAATTCTCTGGACATATCCCACCGTTGAAAAAACCCACGTCGGTAACTTCCCTGGACCTTTCACACAACAAA CTTGAAGGAGAGATCCCCGACAGCTTTTCCAAATTCAGTAACGAATCATTTCTAGGAAATGACAGACTCTGTGGGAAACAACTTGACAGGGATTGCTCCT CAATGGTTGCAGAATCTTTGCCTCAACCTGCTGTTGAAGAAAAAAAAGAAAGCGCTAATTCAGACAGTCATACCAAATTGGCAATTGGAATCGGAGTTCT AGTAGTGATGGGTATTTTAATTATCGCTGCCTTTACTGGGAGGAAGAAGGATACAGACGATGATTTCAGTATTTTGGAGAAAGAAACACCCAATGAGATG ATTCCTGTGCGCGTACGCTCAATTAAGAAGCCAGCTGAAGGGAGTACTCGGAGAGGCCTTGACTCTTCCCGGAAGGGTTCCTCTCACGGAAGCAAGAATG GTATGGGTGATCTGATCATGATTAACGATGAAAAGGGTGCATTTGGATTGCCTGATTTGATGAAGGCAGCAGCAGAAGTGTTGGGAAATGGAGGGTTGGG GTCTGCATACAAGGCTGTCATGACAAATGGATTGTCAGTGGTGGTGAAGAGGATGAGGGAGATGAATAAGTTAGGGAGAGATGGGTTTGATGTTGAGATG AGACGGTTTGGAAGGATAAAGCACAAAAATATTTTGGCACCATTGGCATACCATTACAGGAAGGAGGAGAAGCTGTTGGTATCAGAGTATGTGCCCAAGG GCAGCTTGTTGTATGTCTTGCATGGTGACCGTGGAACATGTCATGCCGACCTCAATTGGCCCACACGTCTGAAGATAATCAAGGGAATCTCAAGTGCATT AGGTTTTCTCCATTCAGAGTACGCAACATATGACCTTCCACATGGAAATCTCAAGTCCAGCAATGTTCTTTTAAGTGAAAACTATGAGCCGCTAATCATT GACTATGCCCTGGACCCGCTAACCAATCCCAACCATGCTGCACAAGCGATGTTTGCTTACAAGTCCCCGGAATATATCCAACACCAGCAAATTTCTCCGA AGTCTGATGTCTATTGTCTAGGTATCATAATTCTTGAAATCATTACAGGGAAGTTCCCTTCTCAGTATCTTACCAATGGCAAGGGAGGGACTGATGTGGT CCAATGGGTCTTACAAGCAAGTTCTGAACAGAGAGAGCAGGACTTGATCGATCCTGAGATTGCGAACAACACTAGTTCAATTGACCAAATGGTGCAGCTA CTCCGAATTGGGGCAACTTGCATCGAAAGTAGTCCAGTGCAGCGGTTAGACACGAGGGAAGCGATTAGGAGAATAGAACAAATACTAGTCTGA
AA sequence Show only first row Show all	>Potri.006G139700.1 pacid=42769408 polypeptide=Potri.006G139700.1.p locus=Potri.006G139700 ID=Potri.006G139700.1.v4.1 annot-version=v4.1 MAAVRIRTVFVLSLLTFSLSLSKLAFSLTENEALLKVKSSFTNAEALDDWDSRSSPCVKRWAGIICFGGLITGLHLSDFGLSGTIDIEALQQLRALRTLS LKNNSFSGQIPAFNKLGALKLLLLSHNKFSGQIPNDFFSSMASLKKVWLSNNDFTGNIPVSLMSLPHLLELHLEGNQFSGHIPPLKKPTSVTSLDLSHNK LEGEIPDSFSKFSNESFLGNDRLCGKQLDRDCSSMVAESLPQPAVEEKKESANSDSHTKLAIGIGVLVVMGILIIAAFTGRKKDTDDDFSILEKETPNEM IPVRVRSIKKPAEGSTRRGLDSSRKGSSHGSKNGMGDLIMINDEKGAFGLPDLMKAAAEVLGNGGLGSAYKAVMTNGLSVVVKRMREMNKLGRDGFDVEM RRFGRIKHKNILAPLAYHYRKEEKLLVSEYVPKGSLLYVLHGDRGTCHADLNWPTRLKIIKGISSALGFLHSEYATYDLPHGNLKSSNVLLSENYEPLII DYALDPLTNPNHAAQAMFAYKSPEYIQHQQISPKSDVYCLGIIILEIITGKFPSQYLTNGKGGTDVVQWVLQASSEQREQDLIDPEIANNTSSIDQMVQL LRIGATCIESSPVQRLDTREAIRRIEQILV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42880			Leucine-rich repeat protein ki...		Potri.006G139700 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219900 [exp]	1.00	0.9894
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	2.44	0.9779	Pt-PGIP.4
AT2G28690			Protein of unknown function (D...		Potri.009G027100 [exp]	3.16	0.9658
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014600 [exp]	4.00	0.9660
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073091 [exp]	10.81	0.9521
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	15.42	0.9519	BFRUCT1.1
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	16.52	0.9587
AT1G16260			Wall-associated kinase family ...		Potri.003G185644 [exp]	20.04	0.9735
AT1G29290			unknown protein		Potri.001G393101 [exp]	22.58	0.9709
					Potri.004G221450 [exp]	25.13	0.9729

Compare expression of checked genes

Potri.006G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.