Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19140 394 / 2e-138 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027662 [exp] 399 / 2e-140 AT1G19140 378 / 3e-132 unknown protein Lus10039930 [exp] 394 / 2e-138 AT1G19140 365 / 3e-127 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08511 [poplar] [flax] COQ9 COQ9
Representative CDS sequence Show only first row Show all	>Potri.006G139800.2 pacid=42770396 polypeptide=Potri.006G139800.2.p locus=Potri.006G139800 ID=Potri.006G139800.2.v4.1 annot-version=v4.1 ATGTATAGGACGGCGGCGTTGGCAAGGCGCCTGCTTTCTGGTGCAACTGCTGGTAACAATAGCAACAGCCGTATCAGATATCTTAATCTCCGAACTACAA TTATCGGCTCTCGCTATTGCACAGCGGTCAATAACAATCATAGTTTTCCTCAATCAATCTTCAACCAAAACCAAACCCCACGTGCTAATCTAGAATTCCC TAATCAATCAGAATCAACGTCGTCATCCAACTGGTCAACATCATCAACGGCTGAGGATGTTCGACAACGGCAGGAGAGACAGAAACCGAGGATTGAGTAC CAAGAACAGCAAGCTCGAGTTCTTGAAGCCTCCCTTCACCACGTGTTAAGGTTGGGATGGAGTGAAGAAGCTATGATTGCTGGAGCAAGAGATGTGGGCG TTTCTCCTTCAATTGTTGGATCATTTCCTAGAAAAGAGGCTGCTTTAGTTGAGTTTTTCATGGATGAGTGCTTACAAAAGCTTATTGATAGAATTGATTC TGGAGAGGAGTTACAAAACTTGGTACCTAGTGAGCGCATCTCTAAGCTCCTCAAGATTCGTCTTGAAATGCAATCTCCGTATATATCGAAATGGCCCCAA GTCCTTAGCATCCAAGCATACCCATCAAATGCGCCGACAAGTTTTAAGCAGCGTGCAATGCTGGTTGATGAGATCTGGCATGCTGTTGGTGATGAGGGCT CTGATATAGATTGGTATGTGAAGCGCACTGTCCTTGGAGGAATATACTCAACAACAGAGATTTACATGCTGACTGATAGCTCACCAGATTTCCGCGATAC ATGGGCATTCCTAGATGATCGAGTGAAAGATGCTTTTGATCTCAAGAAAACCATTCAGGAGGCAATGTATATGGCAGAAGCTGTTGGTGCTGGAATGGGG AACTCTTTCCAAGGATTTGTAAGGAGAGTTTTTCAGAGGTGA
AA sequence Show only first row Show all	>Potri.006G139800.2 pacid=42770396 polypeptide=Potri.006G139800.2.p locus=Potri.006G139800 ID=Potri.006G139800.2.v4.1 annot-version=v4.1 MYRTAALARRLLSGATAGNNSNSRIRYLNLRTTIIGSRYCTAVNNNHSFPQSIFNQNQTPRANLEFPNQSESTSSSNWSTSSTAEDVRQRQERQKPRIEY QEQQARVLEASLHHVLRLGWSEEAMIAGARDVGVSPSIVGSFPRKEAALVEFFMDECLQKLIDRIDSGEELQNLVPSERISKLLKIRLEMQSPYISKWPQ VLSIQAYPSNAPTSFKQRAMLVDEIWHAVGDEGSDIDWYVKRTVLGGIYSTTEIYMLTDSSPDFRDTWAFLDDRVKDAFDLKKTIQEAMYMAEAVGAGMG NSFQGFVRRVFQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19140			unknown protein		Potri.006G139800 [exp]	0	1
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.010G199200 [exp]	3.00	0.8672
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	9.89	0.8743
AT2G20830			transferases;folic acid bindin...		Potri.013G145800 [exp]	15.68	0.8707
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	18.33	0.8663
AT5G28050			Cytidine/deoxycytidylate deami...		Potri.005G049300 [exp]	26.32	0.8371
AT2G17350			unknown protein		Potri.009G169200 [exp]	27.36	0.8618
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	31.85	0.8357
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	33.13	0.8642
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	33.54	0.8646	PGR5.2
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	34.87	0.8551

Compare expression of checked genes

Potri.006G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.