Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72490 143 / 2e-41 unknown protein AT1G17400 116 / 7e-31 unknown protein AT1G19115 56 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G068300 [exp] 190 / 8e-60 AT1G72490 279 / 2e-94 unknown protein Potri.001G166700 [exp] 189 / 2e-59 AT1G72490 269 / 2e-90 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037689 [exp] 129 / 1e-35 AT1G72490 246 / 9e-81 unknown protein Lus10015679 [exp] 117 / 1e-30 AT1G72490 239 / 1e-76 unknown protein Lus10013160 [exp] 114 / 5e-30 AT1G72490 202 / 1e-63 unknown protein Lus10008123 [exp] 107 / 2e-27 AT1G72490 200 / 2e-62 unknown protein Lus10039921 [exp] 100 / 2e-25 AT1G17400 80 / 2e-18 unknown protein Lus10027660 [exp] 99 / 6e-25 AT1G17400 81 / 5e-19 unknown protein Lus10000079 [exp] 54 / 1e-09 ND 40 / 2e-05
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G140100.2 pacid=42766971 polypeptide=Potri.006G140100.2.p locus=Potri.006G140100 ID=Potri.006G140100.2.v4.1 annot-version=v4.1 ATGAAGATAGTCGTTTGGATGCAAAACAAATTCTATAGGAGACATGACAGCAAGAAACCAAACTCCATTTCTGTTGATTATCACATTCGGCAAGAATCTC GTAAAGAAGAATTCATTGACTGGCCTAATGAATTGCTGGCAATTGGGACGTTTGGAAACAAATCCATAAAAGAAGAATTTAAGCATAACCATTTCTCCCA AAATCTTCCCCAAGAACTTACACCTGAAGAAGTTGGAAAACTGCAAAATGAGCTGAGCATCTTATTGCATAAACAAGGTGGATCAACTGATGGAGCAGAA TCAGAAACTGCTAATTTTTTCAATAGCCAAACAAGCATGGAAGATGACAGTACAAATTCTGACGGCTGTTCTGATGAGTCAAATAACAAAGATTGCTGTG TTCAGGCTAACACCGAGGTTGTTACCAGCAGAAGGAAAGATATATGGGCAGACAACAGTGCAGCAATTAACAAAAAGTCTTTGTCTTTTCTTCTAAAGAA GATGTTCATTTGTGGCGGTGGATTCTCTCCTACCCCTAGTTTAAAGAATCAAGTCCCAGAGTCCAGAATGGAAAAGATATTGAGGGCAATACTTCACAAG AAGATATATCCACAAAATCCGAGTCCAAAATCATCAAGGAACAAATATTTGGAGAATAAACAAAAGCCGAAGTCTGCCGAAGAGGATGGAATAGATGAGA AGGCTGATGAAGGAAGTAAATGGGTGAAGACAGATTCTGAATATATAGTGTTGGAGATATAA
AA sequence Show only first row Show all	>Potri.006G140100.2 pacid=42766971 polypeptide=Potri.006G140100.2.p locus=Potri.006G140100 ID=Potri.006G140100.2.v4.1 annot-version=v4.1 MKIVVWMQNKFYRRHDSKKPNSISVDYHIRQESRKEEFIDWPNELLAIGTFGNKSIKEEFKHNHFSQNLPQELTPEEVGKLQNELSILLHKQGGSTDGAE SETANFFNSQTSMEDDSTNSDGCSDESNNKDCCVQANTEVVTSRRKDIWADNSAAINKKSLSFLLKKMFICGGGFSPTPSLKNQVPESRMEKILRAILHK KIYPQNPSPKSSRNKYLENKQKPKSAEEDGIDEKADEGSKWVKTDSEYIVLEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72490			unknown protein		Potri.006G140100 [exp]	0	1
					Potri.001G388450 [exp]	6.48	0.8909
					Potri.001G388600 [exp]	9.48	0.8961	PPO5
AT3G46280			protein kinase-related (.1)		Potri.013G030866 [exp]	9.89	0.9072
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	9.94	0.8779
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	14.83	0.8985
AT4G27870			Vacuolar iron transporter (VIT...		Potri.001G127900 [exp]	17.02	0.8615
AT1G27040			Major facilitator superfamily ...		Potri.014G036200 [exp]	19.10	0.8956
					Potri.007G082600 [exp]	20.19	0.8943
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	20.78	0.8957
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012400 [exp]	22.64	0.8466

Compare expression of checked genes

Potri.006G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.