Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20680 596 / 0 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT5G64020 462 / 2e-161 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT2G37720 414 / 2e-141 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 185 / 6e-53 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 174 / 1e-49 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G19160 175 / 3e-49 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G11570 162 / 5e-45 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 162 / 2e-44 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G06700 163 / 6e-44 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 161 / 1e-43 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G065100 [exp] 547 / 0 AT5G64020 533 / 0.0 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.007G104300 [exp] 533 / 0 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G064875 [exp] 482 / 2e-170 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.008G203900 [exp] 180 / 2e-51 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.012G129700 [exp] 172 / 2e-47 AT4G25360 640 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.015G131600 [exp] 171 / 5e-47 AT4G25360 671 / 0.0 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2) Potri.002G195800 [exp] 167 / 7e-46 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.002G054400 [exp] 166 / 7e-46 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G043300 [exp] 166 / 3e-45 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039914 [exp] 632 / 0 AT5G20680 597 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10027651 [exp] 625 / 0 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10038577 [exp] 498 / 8e-175 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10037877 [exp] 382 / 5e-132 AT5G64020 404 / 1e-141 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10034039 [exp] 185 / 5e-53 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10002430 [exp] 178 / 6e-50 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10004225 [exp] 172 / 3e-48 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10021328 [exp] 170 / 5e-48 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 169 / 1e-47 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 168 / 1e-46 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11770 [poplar] [flax] GAPT GRB2-binding adapter (GAPT) CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.006G140300.8 pacid=42767247 polypeptide=Potri.006G140300.8.p locus=Potri.006G140300 ID=Potri.006G140300.8.v4.1 annot-version=v4.1 ATGAAAGCAGGGTTTTCAATATTCAAGAGTACAGCATTCTCTCTTCTACTCATTGTTCTTGTGTGTGCAACTGTTCTTGTATGGGCATGGCAGAGAACTC CGCTTCTAACCGCCTTCCTCCCGCCTAATAGTCTTCTACAACTTTCGCCAGAAGATAAAGACAATCAGCCAGTCCTGACAGTAGGAAGAAATGGCACTGC AGAAACTTCTACAGGTTTGGTAGAAGCAGAAGTGAAGCATGACCAGAAAATGGAAACAAATCTGAAAACAGATGTGCAAATTATGGAGTTTGCACCACCA GAGCGTTCTGAAAATACAAGCTCTACCACAGGGAAGGAACAATATAATGAGAATGTTAATGATCAAGGCTGTAACTATGCAAAAGGAAAATGGGTTTTAG ATAATAGCCGGCCTTTATATTCTGGATTTCATTGTAATCAATGGCTGTCACATATGTGGGCCTGCCGCTTGATGCAGCGCAAGGATTTTGCCTATGAAAA GCTACGGTGGCAACCAAAAAATTGTCAAATGGAAGAATTTGAAGTGTCCAATTTCTTAGAAAGGATGCGAGACAAAACTCTAGCTTTTGTTGGAGACTCT TTGGGCCGACAGCAGTTCCAGTCGTTAATGTGCATGATCACTGGTGGTAAGGAGAGCCATGATGTAAAAGATGTAGGAAAGGAGTATGGACTCGTCATGC CTCATGGAGGTACTCGCCCTAATGGGTGGGCTTATCGGTTTTCAAGCACCAATACGACTGTCCTTTATTACTGGTCAACTTGCCTCTGTGACCTGGAACC TATTAATACCACAAACCCAGAAACTGACTACGCCATGCATCTTGATCGGCCTCCAGGATTTTTGCGTCAATTTCTTCATAAATTAGACGTCCTAGTTCTG AACACAGGGCATCACTGGAATCGAGGAAAGCTTAAAGCTAACCGCTGGGTCATGTATGTGGGTGGTATGCCCAATACCAACAGGAGACTAGCAATGATTG GGGATGCCAAAAACTTCACTATCCATAGCATTGTCAATTGGGTGAATTCTCAGCTTCCAAAACATCCACACTTGAAAGCTTTCTATCGAAGCATCTCACC TAGGCATTTTGTCAATGGTGATTGGAACACAGGGGGGAGCTGTGACAACACAACCCCAATGTCTATAGGAAAGGAAGTACTGCAAGATGAGTCTAGTGAT TATAGTGCTGGAAATGCAGTGAAGGGGACTGGGGTTAAGCTCTTGGACATAACAGCTCTATCCCAACTAAGAGATGAGGGTCACATATCACATTATAGAA CTACAGCTGCGAAAGGAGTGCATGATTGCTTGCATTGGTGTCTGCCTGGTGTTCCTGACAACTGGAATGAAATCCTTTTCGCACATATTAGTGCTACATC AGTGATTAATTCTTGA
AA sequence Show only first row Show all	>Potri.006G140300.8 pacid=42767247 polypeptide=Potri.006G140300.8.p locus=Potri.006G140300 ID=Potri.006G140300.8.v4.1 annot-version=v4.1 MKAGFSIFKSTAFSLLLIVLVCATVLVWAWQRTPLLTAFLPPNSLLQLSPEDKDNQPVLTVGRNGTAETSTGLVEAEVKHDQKMETNLKTDVQIMEFAPP ERSENTSSTTGKEQYNENVNDQGCNYAKGKWVLDNSRPLYSGFHCNQWLSHMWACRLMQRKDFAYEKLRWQPKNCQMEEFEVSNFLERMRDKTLAFVGDS LGRQQFQSLMCMITGGKESHDVKDVGKEYGLVMPHGGTRPNGWAYRFSSTNTTVLYYWSTCLCDLEPINTTNPETDYAMHLDRPPGFLRQFLHKLDVLVL NTGHHWNRGKLKANRWVMYVGGMPNTNRRLAMIGDAKNFTIHSIVNWVNSQLPKHPHLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESSD YSAGNAVKGTGVKLLDITALSQLRDEGHISHYRTTAAKGVHDCLHWCLPGVPDNWNEILFAHISATSVINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.006G140300 [exp]	0	1
AT1G80610			unknown protein		Potri.001G313900 [exp]	1.00	0.7663
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Potri.006G052900 [exp]	2.44	0.6624	CPK14.1
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Potri.018G045100 [exp]	3.46	0.6758	HB1.5
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.010G046900 [exp]	7.41	0.6261
AT4G14420			HR-like lesion-inducing protei...		Potri.008G165200 [exp]	10.95	0.6609
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	17.88	0.5874
AT5G60760			P-loop containing nucleoside t...		Potri.004G213500 [exp]	24.55	0.6021
AT4G38350			Patched family protein (.1.2)		Potri.005G251800 [exp]	28.61	0.5519
AT2G05590			TLD-domain containing nucleola...		Potri.010G065900 [exp]	32.31	0.5341
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	35.00	0.6114

Compare expression of checked genes

Potri.006G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.