Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05840 463 / 5e-168 PAA2 20S proteasome subunit PAA2 (.1.2) AT5G35590 458 / 7e-166 PAA1 proteasome alpha subunit A1 (.1) AT1G79210 157 / 2e-47 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G16470 155 / 6e-47 PAB1 proteasome subunit PAB1 (.1.2) AT3G51260 146 / 4e-43 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G66140 145 / 2e-42 PAD2 proteasome alpha subunit D2 (.1) AT1G53850 141 / 3e-41 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G14290 141 / 4e-41 PAE2 20S proteasome alpha subunit E2 (.1) AT3G22110 139 / 2e-40 PAC1 20S proteasome alpha subunit C1 (.1) AT1G47250 131 / 4e-37 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139600 [exp] 494 / 2e-180 AT2G05840 459 / 2e-166 20S proteasome subunit PAA2 (.1.2) Potri.006G110800 [exp] 494 / 2e-180 AT2G05840 453 / 7e-164 20S proteasome subunit PAA2 (.1.2) Potri.012G123550 [exp] 157 / 2e-47 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 157 / 2e-47 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.009G133800 [exp] 147 / 2e-43 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 144 / 2e-42 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.006G008800 [exp] 141 / 4e-41 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 139 / 2e-40 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.003G072500 [exp] 135 / 4e-39 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027669 [exp] 484 / 4e-176 AT2G05840 473 / 1e-171 20S proteasome subunit PAA2 (.1.2) Lus10039932 [exp] 472 / 4e-171 AT2G05840 458 / 1e-165 20S proteasome subunit PAA2 (.1.2) Lus10017135 [exp] 155 / 8e-47 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 154 / 3e-46 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10042145 [exp] 144 / 5e-42 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10041890 [exp] 140 / 1e-40 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10004235 [exp] 135 / 1e-39 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10018318 [exp] 142 / 2e-38 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037454 [exp] 138 / 2e-37 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 138 / 4e-37 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00227 [poplar] [flax] Proteasome Proteasome subunit CL0052 [poplar] [flax] NTN PF10584 [poplar] [flax] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Potri.006G140400.1 pacid=42768198 polypeptide=Potri.006G140400.1.p locus=Potri.006G140400 ID=Potri.006G140400.1.v4.1 annot-version=v4.1 ATGAGCAGAGGAAGTGGAGGCGGATACGATCGCCATATCACCATATTCTCCCCTGAAGGTCGCCTCTTTCAAGTTGAGTATGCGTTCAAGGCAGTGAAGG CAGCTGCGACAACTTCCATTGGAGTTCGCGGCAAGGATTCTGTCTGTGTCGTCACTCAAAAGAAGGTTCCGGACAAGCTTTTGGATCAGACTAGTGTTAC TCACCTTTTCCCTATTACCAAGTACCTTGGACTACTTGCCACCGGCATGACAGCTGATGCAAGGAATTTAGTACAACAAGCAAGGAATGAAGCGGCGGAG TTTAGGTTCAGATATGGATATGAAATGCCTGTGGATGCATTAGCGAGATGGATTGCGGACAAATCACAAGTTTATACTCAGCATGCATACATGAGACCTC TTGGAGTTGTTGCTATGGTTTTGGGTATTGATGAAGAGAATGGGCCTCAACTTTACAAGTGTGATCCAGCTGGCCATTTTTTTGGTCACAAGGCTACAAG TGCTGGATTGAAAGAACAAGAGGCTATCAATTTCCTGGAAAAGAAAATGAAAAATGACCCTGCTCTCTCATATGAGGAAACTGTGCAGACTGCTATTTCT GCTCTTCAATCTGTTCTTCAAGAGGATTTTAAAGCTACTGAGATAGAGGTGGGGGTTGTGAGAACAGACAATCTTGTTTTTAGAGTGCTGTCCACTGAGG AAATTGATGAACATTTAACTGCCATAAGTGAACGGGACTGA
AA sequence Show only first row Show all	>Potri.006G140400.1 pacid=42768198 polypeptide=Potri.006G140400.1.p locus=Potri.006G140400 ID=Potri.006G140400.1.v4.1 annot-version=v4.1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAATTSIGVRGKDSVCVVTQKKVPDKLLDQTSVTHLFPITKYLGLLATGMTADARNLVQQARNEAAE FRFRYGYEMPVDALARWIADKSQVYTQHAYMRPLGVVAMVLGIDEENGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPALSYEETVQTAIS ALQSVLQEDFKATEIEVGVVRTDNLVFRVLSTEEIDEHLTAISERD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G140400 [exp]	0	1
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.002G119600 [exp]	4.12	0.9097
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Potri.018G063600 [exp]	5.29	0.8996	TIF3.1
AT1G80230			Rubredoxin-like superfamily pr...		Potri.003G060100 [exp]	7.00	0.8927
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.015G007100 [exp]	9.79	0.9096	UBQ1.4
AT5G57290			60S acidic ribosomal protein f...		Potri.003G010200 [exp]	10.39	0.9014
AT1G51980			Insulinase (Peptidase family M...		Potri.010G036700 [exp]	10.48	0.8426
AT1G67250			Proteasome maturation factor U...		Potri.017G111900 [exp]	13.22	0.8585
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.002G198700 [exp]	16.24	0.8840
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Potri.009G133800 [exp]	17.02	0.8411	Pt-PAD1.3
AT3G53740			Ribosomal protein L36e family ...		Potri.015G145800 [exp]	20.78	0.8928

Compare expression of checked genes

Potri.006G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.