Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51430 170 / 2e-49 SSL5, YLS2 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G51420 166 / 1e-47 ATSSL4 strictosidine synthase-like 4 (.1) AT3G51440 165 / 1e-47 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G51450 153 / 4e-43 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 135 / 4e-36 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT1G08470 120 / 2e-30 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 114 / 3e-28 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 113 / 3e-28 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57010 107 / 4e-26 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57030 107 / 5e-26 Calcium-dependent phosphotriesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099400 [exp] 179 / 5e-51 AT3G51430 397 / 1e-134 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.017G027600 [exp] 141 / 3e-38 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.007G130700 [exp] 141 / 4e-38 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.016G037900 [exp] 127 / 2e-33 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.001G214500 [exp] 118 / 8e-30 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.006G040900 [exp] 110 / 7e-27 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 101 / 9e-24 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.008G109966 [exp] 97 / 2e-22 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 97 / 2e-22 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028376 [exp] 173 / 8e-51 AT3G51430 380 / 1e-131 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10041827 [exp] 166 / 7e-48 AT3G51440 390 / 6e-135 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10008151 [exp] 128 / 4e-33 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 127 / 7e-33 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10008451 [exp] 124 / 9e-32 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10013370 [exp] 117 / 2e-29 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10012095 [exp] 93 / 8e-21 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1) Lus10034411 [exp] 87 / 3e-19 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10009014 [exp] 89 / 7e-19 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10009646 [exp] 88 / 9e-19 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF03088 [poplar] [flax] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Potri.006G140500.3 pacid=42767104 polypeptide=Potri.006G140500.3.p locus=Potri.006G140500 ID=Potri.006G140500.3.v4.1 annot-version=v4.1 ATGATACCTTGTGTTTCAGCATGCTCAGGCTTTCTGCTAGCTTGTTTGCTTGCCTTTACACTTCAAATCTTCTACTTCTCACCTTTATCTCCGGACTTGC TTGAACTGCCTCCAGCTTCAGCTCTTCCCACAAACAAGCACTTACAGGAAGTGACTAAACTTGGAGAAGGATTTCTGGATCGCCCAGAGGATGTTGTCGT GGATAGAGATGGTATCCTCTACACAGCTGTTAGAGATGGGTGGATTAAAAGAATGCATAAGAACGGATCCTGGGAGAATTGGAAGAAGATAGACAGTGAT GCTTTACTTGGGATTGCAACTTCCAAGGAAGGTGGTCTTATTGTTTGTGATGCTGAAAAGGGTTTGCTTAAGGTTAGTGAAGATGGAGTGGTGGTTCTTG CAACACATATTAACGATGGATCCAAAATAAGGTTTGCAGACGAGGTCATTGAATCTTCGGATGGAAGTCTTTATTTCAGTGTTGCAAGCACCAAATTTGG ATTCCACGACTGGTACTTGGACGTTCTGGAGGCAAAACCTCATGGGCAGTTGCTCAAGTATGATCCATCATTGAATGAGACATCGATTTTGCTTGATGGT TTGTGCTTCCCTAATGGTGTTGCTCTCTCAAGAGAGGAAGATTATCTGGTCTTCTGCGAAACTTGGAAATACAGGTGCCAGAAATATTGGCTGAAGGGAA TAGACAAGGGGAAAACAGAGATCTTCATCGACAACCTTCCTGGTGGTCCTGATAACATCTATCTGGCTCCGGATGGCTCTTTCTGGATTGCTGTGCTACA GGTGGCGTCTAAAGGGCTGGAGTTTGTGCACAGATTAAAGCCATCCAAACACTTGGTTGCATCCTTTCCGAAGTTAGTTAACCTAGTCATTGGTGTCAAA AGGAAAGCTACGGTGGTAAACGTGGCAGCTGATGGCAAGATTACGAGGAAGTTTGACGATCCTGATGGCAAAGTGATGTCTTTTGTGGATGGGGACACCG AACCGGAAACATTGGTTACGCGCGCGTATAATTATAGACGATGGAGGATAGCCCAAACCATTGAGAAATTGGGCTTTAGCTTATGTTTTTGGGCTTAA
AA sequence Show only first row Show all	>Potri.006G140500.3 pacid=42767104 polypeptide=Potri.006G140500.3.p locus=Potri.006G140500 ID=Potri.006G140500.3.v4.1 annot-version=v4.1 MIPCVSACSGFLLACLLAFTLQIFYFSPLSPDLLELPPASALPTNKHLQEVTKLGEGFLDRPEDVVVDRDGILYTAVRDGWIKRMHKNGSWENWKKIDSD ALLGIATSKEGGLIVCDAEKGLLKVSEDGVVVLATHINDGSKIRFADEVIESSDGSLYFSVASTKFGFHDWYLDVLEAKPHGQLLKYDPSLNETSILLDG LCFPNGVALSREEDYLVFCETWKYRCQKYWLKGIDKGKTEIFIDNLPGGPDNIYLAPDGSFWIAVLQVASKGLEFVHRLKPSKHLVASFPKLVNLVIGVK RKATVVNVAADGKITRKFDDPDGKVMSFVDGDTEPETLVTRAYNYRRWRIAQTIEKLGFSLCFWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	0	1
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Potri.002G234400 [exp]	1.00	0.9487
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	3.46	0.9251
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	4.00	0.9328
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	4.79	0.8980
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	5.09	0.9448
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	5.29	0.9214
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	6.92	0.9059
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	7.07	0.9177	XTH2.2
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.015G074100 [exp]	8.66	0.9366	Pt-ALDH1.3
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.015G020700 [exp]	9.21	0.9317

Compare expression of checked genes

Potri.006G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.