Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05910 245 / 7e-83 Protein of unknown function (DUF567) (.1) AT5G20640 215 / 1e-70 Protein of unknown function (DUF567) (.1) AT3G15810 86 / 3e-20 Protein of unknown function (DUF567) (.1) AT1G80120 77 / 7e-17 Protein of unknown function (DUF567) (.1) AT3G10986 69 / 6e-14 Protein of unknown function (DUF567) (.1) AT5G01750 67 / 2e-13 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 66 / 3e-13 Protein of unknown function (DUF567) (.1) AT2G14560 58 / 5e-10 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT5G41590 55 / 7e-09 Protein of unknown function (DUF567) (.1) AT1G33840 53 / 2e-08 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192000 [exp] 87 / 7e-21 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 86 / 4e-20 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 85 / 5e-20 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 82 / 1e-18 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 74 / 1e-15 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 70 / 2e-14 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 70 / 2e-14 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.010G182300 [exp] 68 / 8e-14 AT3G56180 201 / 5e-66 Protein of unknown function (DUF567) (.1) Potri.008G075100 [exp] 65 / 1e-12 AT3G56180 177 / 2e-56 Protein of unknown function (DUF567) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033432 [exp] 291 / 1e-100 AT2G05910 221 / 5e-74 Protein of unknown function (DUF567) (.1) Lus10033433 [exp] 287 / 5e-99 AT2G05910 221 / 9e-74 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 102 / 2e-26 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 77 / 1e-16 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 69 / 5e-14 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 60 / 4e-11 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 60 / 8e-11 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10002477 [exp] 60 / 8e-11 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 60 / 8e-11 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10007423 [exp] 60 / 1e-10 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.006G140900.2 pacid=42770275 polypeptide=Potri.006G140900.2.p locus=Potri.006G140900 ID=Potri.006G140900.2.v4.1 annot-version=v4.1 ATGTGTATGGCTGCAGCAAAGGCAGATGCCATGCCGATCATAAGCAAGTTATATTGTTCGTCTTCTCAAGCAGTGCTTGTAGTTAGGAAAAGGCCTCATG TGGTCAGCGGAGGGGGTTTTGTAGTCACAGATTGTAGCCAAAAGGTTGTTTTTAGGGTTGATGGATGTGGAGTTAGTGGCTCAGAAGGGGAATTAATATT ACGTGACAGTAGTGGTGAAGCCTTGCTACTTATTCGTCGAAAGGGAGGCATGGTTCAGGCCTTAAGCATCCATAGGAAATGGAAAGGTTACACTTTTGAC TATGAAGGATCACAGAAGCTGGTTTTCAGCTTAAAGGAACCAAACTTCTCTTGTCTGGTAAGGAAGAATGCAATCAGAGTTTCCACTGAGCCTAGAAGAA GCAACAAAGACTGGGACTTTGAGATCAAAGGTTATTTTCCTGATCGGTCTTGTAGCATTGTTGACTCCTTGGGCAATATTGTAGCTCAGATTGGAATCAA TAAGGAAGAAGACCAGTTGATGGCAAACAAGGATCTCTATAATGTAGTTGTAAGACCAGGCATTGATCAGGTTTTCACTTTCGGTGTCATTGCAGTTCTT GATTATATCTATGGTGAATCGACAAGCGGCGGGAGAAGAAGAAGCAGTGGAGATGTGCAATTGTGGCTATTGGAATTGTCTAGGCCTCAAGAGATATTAC CACCACAAGGACAAGAGTAG
AA sequence Show only first row Show all	>Potri.006G140900.2 pacid=42770275 polypeptide=Potri.006G140900.2.p locus=Potri.006G140900 ID=Potri.006G140900.2.v4.1 annot-version=v4.1 MCMAAAKADAMPIISKLYCSSSQAVLVVRKRPHVVSGGGFVVTDCSQKVVFRVDGCGVSGSEGELILRDSSGEALLLIRRKGGMVQALSIHRKWKGYTFD YEGSQKLVFSLKEPNFSCLVRKNAIRVSTEPRRSNKDWDFEIKGYFPDRSCSIVDSLGNIVAQIGINKEEDQLMANKDLYNVVVRPGIDQVFTFGVIAVL DYIYGESTSGGRRRSSGDVQLWLLELSRPQEILPPQGQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05910			Protein of unknown function (D...		Potri.006G140900 [exp]	0	1
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041600 [exp]	4.00	0.9266	HNL.5
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Potri.010G024500 [exp]	5.65	0.9082
AT1G30700			FAD-binding Berberine family p...		Potri.001G462466 [exp]	6.48	0.8772
AT1G02460			Pectin lyase-like superfamily ...		Potri.014G115700 [exp]	7.21	0.8868
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	7.34	0.8970
AT2G23450			Protein kinase superfamily pro...		Potri.014G038600 [exp]	10.48	0.8908
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165300 [exp]	11.22	0.9031
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040300 [exp]	12.24	0.8657
AT2G46850			Protein kinase superfamily pro...		Potri.002G181100 [exp]	16.49	0.8942
AT1G30700			FAD-binding Berberine family p...		Potri.001G462200 [exp]	17.88	0.8423

Compare expression of checked genes

Potri.006G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.